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CBX1 chromobox 1 [ Canis lupus familiaris (dog) ]

Gene ID: 491051, updated on 25-Jul-2026
Official Symbol
CBX1provided by VGNC
Official Full Name
chromobox 1provided by VGNC
Primary source
VGNC:VGNC:38766
See related
Ensembl:ENSCAFG00845016596 RGD:12124071
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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See CBX1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (25157318..25178406, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (23829363..23850430, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (24314854..24335770, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (23926775..23947857, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (24187435..24208348, complement)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene COPI coat complex subunit zeta 2 Neighboring gene microRNA mir-152 Neighboring gene NFE2 like bZIP transcription factor 1 Neighboring gene uncharacterized LOC111097364 Neighboring gene uncharacterized LOC111097365 Neighboring gene sorting nexin 11 Neighboring gene src kinase associated phosphoprotein 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
chromobox protein homolog 1
Names
chromobox homolog 1 (HP1 beta homolog Drosophila )

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    25157318..25178406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038676728.1 → XP_038532656.1  chromobox protein homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LHA8, A0A8I3NPU6
    Related
    ENSCAFP00845023117.1, ENSCAFT00845029418.1
    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cd18654
    Location:112 → 169
    CSD_HP1beta_Cbx1; chromo shadow domain of heterochromatin protein 1 homolog beta

  2. XM_038676727.1 → XP_038532655.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  3. XM_038676725.1 → XP_038532653.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  4. XM_038676726.1 → XP_038532654.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  5. XM_038676724.1 → XP_038532652.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    23926775..23947857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038485779.1 → XP_038341707.1  

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cd18654
    Location:112 → 169
    CSD_HP1beta_Cbx1; chromo shadow domain of heterochromatin protein 1 homolog beta

  2. XM_038485778.1 → XP_038341706.1  

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  3. XM_038485776.1 → XP_038341704.1  

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  4. XM_038485777.1 → XP_038341705.1  

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  5. XM_038485775.1 → XP_038341703.1  

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    24187435..24208348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038611531.1 → XP_038467459.1  

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cd18654
    Location:112 → 169
    CSD_HP1beta_Cbx1; chromo shadow domain of heterochromatin protein 1 homolog beta

  2. XM_038611530.1 → XP_038467458.1  

  3. XM_038611528.1 → XP_038467456.1  

  4. XM_038611529.1 → XP_038467457.1  

  5. XM_038611527.1 → XP_038467455.1  

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    24314854..24335770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038547553.1 → XP_038403481.1  chromobox protein homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LHA8, A0A8I3NPU6
    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cd18654
    Location:112 → 169
    CSD_HP1beta_Cbx1; chromo shadow domain of heterochromatin protein 1 homolog beta

  2. XM_038547552.1 → XP_038403480.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  3. XM_038547550.1 → XP_038403478.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  4. XM_038547551.1 → XP_038403479.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  5. XM_038547549.1 → XP_038403477.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    23829363..23850430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038605010.1 → XP_038460938.1  chromobox protein homolog 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LHA8, A0A8I3NPU6
    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cd18654
    Location:112 → 169
    CSD_HP1beta_Cbx1; chromo shadow domain of heterochromatin protein 1 homolog beta

  2. XM_038604998.1 → XP_038460926.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  3. XM_038604981.1 → XP_038460909.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  4. XM_038604989.1 → XP_038460917.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains

  5. XM_038604974.1 → XP_038460902.1  chromobox protein homolog 1 isoform X1

    Conserved Domains (2) summary
    cd18650
    Location:20 → 69
    CD_HP1beta_Cbx1; chromodomain of heterochromatin protein 1 homolog beta
    cl28914
    Location:112 → 137
    CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
Nucleotide Protein
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