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SLIRP SRA stem-loop interacting RNA binding protein [ Canis lupus familiaris (dog) ]

Gene ID: 490810, updated on 25-Jul-2026
Official Symbol
SLIRPprovided by VGNC
Official Full Name
SRA stem-loop interacting RNA binding proteinprovided by VGNC
Primary source
VGNC:VGNC:51688
See related
Ensembl:ENSCAFG00845007701 RGD:12288143
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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Try the new Transcripts and proteins table
See SLIRP in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (50705481..50713228)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (50158600..50166343)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (50789298..50797024)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (50367496..50375211)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (50390405..50398346)

Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase isozyme L5-like Neighboring gene serine palmitoyltransferase long chain base subunit 2 Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene SNW domain containing 1 Neighboring gene uncharacterized LOC119872910 Neighboring gene aarF domain containing kinase 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
SRA stem-loop-interacting RNA-binding protein, mitochondrial

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051812.1 Reference ROS_Cfam_1.0

    Range
    50705481..50713228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038674349.1 → XP_038530277.1  SRA stem-loop-interacting RNA-binding protein, mitochondrial

    UniProtKB/TrEMBL
    A0A8C0JHQ8, A0A8C0KVL2, A0A8I3MXD8, A0A8I3Q587
    Related
    ENSCAFP00845010540.1, ENSCAFT00845013574.1
    Conserved Domains (1) summary
    cd12242
    Location:20 → 92
    RRM_SLIRP; RNA recognition motif (RRM) found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049268.1 Alternate UMICH_Zoey_3.1

    Range
    50367496..50375211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038483944.1 → XP_038339872.1  

    Conserved Domains (1) summary
    cd12242
    Location:20 → 92
    RRM_SLIRP; RNA recognition motif (RRM) found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

    Range
    50390405..50398346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038609528.1 → XP_038465456.1  

    Conserved Domains (1) summary
    cd12242
    Location:20 → 92
    RRM_SLIRP; RNA recognition motif (RRM) found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

    Range
    50789298..50797024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038545434.1 → XP_038401362.1  SRA stem-loop-interacting RNA-binding protein, mitochondrial

    UniProtKB/TrEMBL
    A0A8C0JHQ8, A0A8C0KVL2, A0A8I3MXD8, A0A8I3Q587
    Conserved Domains (1) summary
    cd12242
    Location:20 → 92
    RRM_SLIRP; RNA recognition motif (RRM) found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    50158600..50166343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_547932.7 → XP_547932.2  SRA stem-loop-interacting RNA-binding protein, mitochondrial

    UniProtKB/TrEMBL
    A0A8C0JHQ8, A0A8C0KVL2, A0A8I3MXD8, A0A8I3Q587
    Conserved Domains (1) summary
    cd12242
    Location:20 → 92
    RRM_SLIRP; RNA recognition motif (RRM) found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins
Nucleotide Protein
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