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LHX4 LIM homeobox 4 [ Canis lupus familiaris (dog) ]

Gene ID: 490300, updated on 25-Jul-2026
Official Symbol
LHX4provided by VGNC
Official Full Name
LIM homeobox 4provided by VGNC
Primary source
VGNC:VGNC:42665
See related
RGD:12098675
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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See LHX4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 7 NC_051811.1 (13541087..13553177)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 7 NC_006589.4 (13392084..13404183)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 7 NC_049228.1 (13682152..13694260)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 7 NC_049267.1 (13451653..13463753)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 7 NC_049748.1 (13558073..13567149)

Chromosome 7 - NC_051811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111096631 Neighboring gene uncharacterized LOC111096632 Neighboring gene quiescin sulfhydryl oxidase 1 Neighboring gene uncharacterized LOC111096634 Neighboring gene acyl-CoA binding domain containing 6 Neighboring gene uncharacterized LOC111096870 Neighboring gene uncharacterized LOC111096871

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
LIM/homeobox protein Lhx4

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051811.1 Reference ROS_Cfam_1.0

    Range
    13541087..13553177
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038671020.1 → XP_038526948.1  LIM/homeobox protein Lhx4 isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:28 → 82
    Homeobox; Homeobox domain

  2. XM_038671019.1 → XP_038526947.1  LIM/homeobox protein Lhx4 isoform X2

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

  3. XM_038671018.1 → XP_038526946.1  LIM/homeobox protein Lhx4 isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049267.1 Alternate UMICH_Zoey_3.1

    Range
    13451653..13463753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038480839.1 → XP_038336767.1  

    Conserved Domains (1) summary
    pfam00046
    Location:28 → 82
    Homeobox; Homeobox domain

  2. XM_038480838.1 → XP_038336766.1  

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

  3. XM_038480837.1 → XP_038336765.1  

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049748.1 Alternate UNSW_CanFamBas_1.0

    Range
    13558073..13567149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038606341.1 → XP_038462269.1  

    Conserved Domains (1) summary
    pfam00046
    Location:28 → 82
    Homeobox; Homeobox domain

  2. XM_038606340.1 → XP_038462268.1  

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

  3. XM_038606339.1 → XP_038462267.1  

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049228.1 Alternate UU_Cfam_GSD_1.0

    Range
    13682152..13694260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038542182.1 → XP_038398110.1  LIM/homeobox protein Lhx4 isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:28 → 82
    Homeobox; Homeobox domain

  2. XM_038542181.1 → XP_038398109.1  LIM/homeobox protein Lhx4 isoform X2

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

  3. XM_038542180.1 → XP_038398108.1  LIM/homeobox protein Lhx4 isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006589.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    13392084..13404183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_547420.7 → XP_547420.3  LIM/homeobox protein Lhx4 isoform X3

    Conserved Domains (1) summary
    pfam00046
    Location:28 → 82
    Homeobox; Homeobox domain

  2. XM_038563459.1 → XP_038419387.1  LIM/homeobox protein Lhx4 isoform X2

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain

  3. XM_038563457.1 → XP_038419385.1  LIM/homeobox protein Lhx4 isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:13 → 67
    Homeobox; Homeobox domain
Nucleotide Protein
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