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LRRC39 leucine rich repeat containing 39 [ Canis lupus familiaris (dog) ]

Gene ID: 490141, updated on 25-Jul-2026
Official Symbol
LRRC39provided by VGNC
Official Full Name
leucine rich repeat containing 39provided by VGNC
Primary source
VGNC:VGNC:54039
See related
Ensembl:ENSCAFG00845013277 RGD:12317983
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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Try the new Transcripts and proteins table
See LRRC39 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (50157952..50187391)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (52481312..52510708)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (50260159..50289763)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (49849685..49879078)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (49828669..49858079)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene cofilin-1-like Neighboring gene RNA 3'-terminal phosphate cyclase Neighboring gene dihydrolipoamide branched chain transacylase E2 Neighboring gene tRNA methyltransferase 13 homolog Neighboring gene SAS-6 centriolar assembly protein Neighboring gene uncharacterized LOC119876382 Neighboring gene solute carrier family 71 member 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
leucine-rich repeat-containing protein 39

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    50157952..50187391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038670015.1 → XP_038525943.1  leucine-rich repeat-containing protein 39

    UniProtKB/TrEMBL
    A0A8C0KES6, A0A8I3NDU9
    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038670014.1 → XP_038525942.1  leucine-rich repeat-containing protein 39

    UniProtKB/TrEMBL
    A0A8C0KES6, A0A8I3NDU9
    Related
    ENSCAFP00845018564.1, ENSCAFT00845023648.1
    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

RNA

  1. XR_005428879.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    49849685..49879078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479952.1 → XP_038335880.1  

    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038479951.1 → XP_038335879.1  

    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

RNA

  1. XR_005327242.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    49828669..49858079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038605380.1 → XP_038461308.1  

    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038605379.1 → XP_038461307.1  

    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

RNA

  1. XR_005395693.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    50260159..50289763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038541228.1 → XP_038397156.1  leucine-rich repeat-containing protein 39

    UniProtKB/TrEMBL
    A0A8C0KES6, A0A8I3NDU9
    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_038541227.1 → XP_038397155.1  leucine-rich repeat-containing protein 39

    UniProtKB/TrEMBL
    A0A8C0KES6, A0A8I3NDU9
    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

RNA

  1. XR_005361150.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52481312..52510708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022420432.2 → XP_022276140.2  leucine-rich repeat-containing protein 39

    UniProtKB/TrEMBL
    A0A8C0KES6
    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_005621872.4 → XP_005621929.2  leucine-rich repeat-containing protein 39

    UniProtKB/TrEMBL
    A0A8C0KES6
    Conserved Domains (2) summary
    COG4886
    Location:41 → 286
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]

RNA

  1. XR_001316450.3 RNA Sequence

Nucleotide Protein
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