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JMJD8 jumonji domain containing 8 [ Canis lupus familiaris (dog) ]

Gene ID: 490091, updated on 5-Mar-2024

Summary

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Official Symbol
JMJD8provided by VGNC
Official Full Name
jumonji domain containing 8provided by VGNC
Primary source
VGNC:VGNC:42190
See related
Ensembl:ENSCAFG00845026831
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (40234435..40237206)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (41155908..41158679)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (40362346..40365117)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (39923171..39925768)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (39883208..39885977)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine rich repeat protein 16 Neighboring gene WD repeat domain 24 Neighboring gene STIP1 homology and U-box containing protein 1 Neighboring gene rhomboid like 1 Neighboring gene ras homolog family member T2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
jmjC domain-containing protein 8; LOW QUALITY PROTEIN: jmjC domain-containing protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    40234435..40237206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038669704.1 → XP_038525632.1  jmjC domain-containing protein 8 isoform X4

    Conserved Domains (1) summary
    cl40423
    Location:150 → 287
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_038669700.1 → XP_038525628.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_038669701.1 → XP_038525629.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_038669698.1 → XP_038525626.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_038669699.1 → XP_038525627.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_038669702.1 → XP_038525630.1  jmjC domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NCC4, A0A8I3Q0Y4, A0A8P0SNQ7
    Related
    ENSCAFP00845037146.1, ENSCAFT00845047337.1
    Conserved Domains (1) summary
    cl40423
    Location:60 → 254
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_038669703.1 → XP_038525631.1  jmjC domain-containing protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:113 → 250
    cupin_RmlC-like; RmlC-like cupin superfamily

RNA

  1. XR_005428695.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    39923171..39925768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479625.1 → XP_038335553.1  LOW QUALITY PROTEIN: jmjC domain-containing protein 8 isoform X5

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    39883208..39885977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038605025.1 → XP_038460953.1  jmjC domain-containing protein 8 isoform X6

  2. XM_038605026.1 → XP_038460954.1  jmjC domain-containing protein 8 isoform X6

  3. XM_038605023.1 → XP_038460951.1  jmjC domain-containing protein 8 isoform X6

  4. XM_038605024.1 → XP_038460952.1  jmjC domain-containing protein 8 isoform X6

  5. XM_038605029.1 → XP_038460957.1  jmjC domain-containing protein 8 isoform X4

    Conserved Domains (1) summary
    cl40423
    Location:150 → 287
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_038605027.1 → XP_038460955.1  jmjC domain-containing protein 8 isoform X2

    Conserved Domains (1) summary
    cl40423
    Location:60 → 254
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_038605028.1 → XP_038460956.1  jmjC domain-containing protein 8 isoform X3

    Conserved Domains (1) summary
    cl40423
    Location:113 → 250
    cupin_RmlC-like; RmlC-like cupin superfamily

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    40362346..40365117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540904.1 → XP_038396832.1  jmjC domain-containing protein 8 isoform X4

    Conserved Domains (1) summary
    cl40423
    Location:150 → 287
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_038540900.1 → XP_038396828.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_038540901.1 → XP_038396829.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_038540898.1 → XP_038396826.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_038540899.1 → XP_038396827.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_038540902.1 → XP_038396830.1  jmjC domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NCC4, A0A8I3Q0Y4, A0A8P0SNQ7
    Conserved Domains (1) summary
    cl40423
    Location:60 → 254
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_038540903.1 → XP_038396831.1  jmjC domain-containing protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:113 → 250
    cupin_RmlC-like; RmlC-like cupin superfamily

RNA

  1. XR_005360995.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    41155908..41158679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038551197.1 → XP_038407125.1  jmjC domain-containing protein 8 isoform X4

    Conserved Domains (1) summary
    cl40423
    Location:150 → 287
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_038551172.1 → XP_038407100.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_038551182.1 → XP_038407110.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_038551156.1 → XP_038407084.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_038551164.1 → XP_038407092.1  jmjC domain-containing protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:103 → 288
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_038551192.1 → XP_038407120.1  jmjC domain-containing protein 8 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NCC4, A0A8I3Q0Y4, A0A8P0SNQ7
    Conserved Domains (1) summary
    cl40423
    Location:60 → 254
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_038551196.1 → XP_038407124.1  jmjC domain-containing protein 8 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NCC4
    Conserved Domains (1) summary
    cl40423
    Location:113 → 250
    cupin_RmlC-like; RmlC-like cupin superfamily

RNA

  1. XR_005365855.1 RNA Sequence

Nucleotide Protein
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