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LOC489976 transmembrane protein 180 [ Canis lupus familiaris (dog) ]

Gene ID: 489976, updated on 12-Jan-2021

Summary

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Gene symbol
LOC489976
Gene description
transmembrane protein 180
See related
Ensembl:ENSCAFG00000017726
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See LOC489976 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (23370677..23427882, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (24727540..24784732, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (23470859..23521488, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (23173183..23230538, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (23086670..23137047, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 6 NC_006588.3 (23232246..23289124, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene otoancorin Neighboring gene methyltransferase like 9 Neighboring gene immunoglobulin superfamily member 6 Neighboring gene uncharacterized LOC102153375 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene cerebellar degeneration related protein 2 Neighboring gene uncharacterized LOC119872181 Neighboring gene RNA polymerase III subunit E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transmembrane protein 180

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    23370677..23427882 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038668861.1 → XP_038524789.1  transmembrane protein 180 isoform X4

  2. XM_038668860.1 → XP_038524788.1  transmembrane protein 180 isoform X3

  3. XM_038668857.1 → XP_038524785.1  transmembrane protein 180 isoform X1

  4. XM_038668862.1 → XP_038524790.1  transmembrane protein 180 isoform X5

  5. XM_038668855.1 → XP_038524783.1  transmembrane protein 180 isoform X1

  6. XM_038668856.1 → XP_038524784.1  transmembrane protein 180 isoform X1

  7. XM_038668858.1 → XP_038524786.1  transmembrane protein 180 isoform X1

  8. XM_038668859.1 → XP_038524787.1  transmembrane protein 180 isoform X2

  9. XM_038668863.1 → XP_038524791.1  transmembrane protein 180 isoform X6

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    23173183..23230538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038478813.1 → XP_038334741.1  transmembrane protein 180 isoform X4

  2. XM_038478812.1 → XP_038334740.1  transmembrane protein 180 isoform X3

  3. XM_038478809.1 → XP_038334737.1  transmembrane protein 180 isoform X1

  4. XM_038478814.1 → XP_038334742.1  transmembrane protein 180 isoform X5

  5. XM_038478807.1 → XP_038334735.1  transmembrane protein 180 isoform X1

  6. XM_038478808.1 → XP_038334736.1  transmembrane protein 180 isoform X1

  7. XM_038478810.1 → XP_038334738.1  transmembrane protein 180 isoform X1

  8. XM_038478811.1 → XP_038334739.1  transmembrane protein 180 isoform X2

  9. XM_038478815.1 → XP_038334743.1  transmembrane protein 180 isoform X6

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    23086670..23137047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604141.1 → XP_038460069.1  transmembrane protein 180 isoform X4

  2. XM_038604140.1 → XP_038460068.1  transmembrane protein 180 isoform X3

  3. XM_038604137.1 → XP_038460065.1  transmembrane protein 180 isoform X1

  4. XM_038604142.1 → XP_038460070.1  transmembrane protein 180 isoform X5

  5. XM_038604135.1 → XP_038460063.1  transmembrane protein 180 isoform X1

  6. XM_038604136.1 → XP_038460064.1  transmembrane protein 180 isoform X1

  7. XM_038604138.1 → XP_038460066.1  transmembrane protein 180 isoform X1

  8. XM_038604139.1 → XP_038460067.1  transmembrane protein 180 isoform X2

  9. XM_038604143.1 → XP_038460071.1  transmembrane protein 180 isoform X6

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    23470859..23521488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540061.1 → XP_038395989.1  transmembrane protein 180 isoform X4

  2. XM_038540060.1 → XP_038395988.1  transmembrane protein 180 isoform X3

  3. XM_038540057.1 → XP_038395985.1  transmembrane protein 180 isoform X1

  4. XM_038540062.1 → XP_038395990.1  transmembrane protein 180 isoform X5

  5. XM_038540055.1 → XP_038395983.1  transmembrane protein 180 isoform X1

  6. XM_038540056.1 → XP_038395984.1  transmembrane protein 180 isoform X1

  7. XM_038540058.1 → XP_038395986.1  transmembrane protein 180 isoform X1

  8. XM_038540059.1 → XP_038395987.1  transmembrane protein 180 isoform X2

  9. XM_038540063.1 → XP_038395991.1  transmembrane protein 180 isoform X6

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24727540..24784732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038544765.1 → XP_038400693.1  transmembrane protein 180 isoform X4

  2. XM_038544757.1 → XP_038400685.1  transmembrane protein 180 isoform X3

  3. XM_038544749.1 → XP_038400677.1  transmembrane protein 180 isoform X1

  4. XM_038544769.1 → XP_038400697.1  transmembrane protein 180 isoform X5

  5. XM_038544735.1 → XP_038400663.1  transmembrane protein 180 isoform X1

  6. XM_014114548.3 → XP_013970023.1  transmembrane protein 180 isoform X1

    Conserved Domains (1) summary
    cl26210
    Location:12 → 430
    MFS_2; MFS/sugar transport protein

  7. XM_022419954.2 → XP_022275662.1  transmembrane protein 180 isoform X1

    Related
    ENSCAFP00000026151.4
    Conserved Domains (1) summary
    cl26210
    Location:12 → 430
    MFS_2; MFS/sugar transport protein

  8. XM_038544750.1 → XP_038400678.1  transmembrane protein 180 isoform X2

  9. XM_038544779.1 → XP_038400707.1  transmembrane protein 180 isoform X6

Nucleotide Protein
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