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MC1R melanocortin 1 receptor [ Canis lupus familiaris (dog) ]

Gene ID: 489652, updated on 24-Sep-2022

Summary

Official Symbol
MC1Rprovided by VGNC
Official Full Name
melanocortin 1 receptorprovided by VGNC
Primary source
VGNC:VGNC:110600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
MC1-R; MSH-R
Orthologs
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Genomic context

See MC1R in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (63922271..63923224, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (63707491..63708444, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (64186690..64187643, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (63942798..63943751, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (63780332..63781285, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 5 NC_006587.3 (63694296..63695249, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene differentially expressed in FDCP 8 homolog Neighboring gene tubulin beta 3 class III Neighboring gene transcription factor 25 Neighboring gene 40S ribosomal protein S12-like Neighboring gene spire type actin nucleation factor 2

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by GO

Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
melanocyte-stimulating hormone receptor
Names
melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor)
melanocortin receptor type 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014282.2NP_001014304.2  melanocyte-stimulating hormone receptor

    Status: VALIDATED

    Source sequence(s)
    AAEX03003947
    UniProtKB/TrEMBL
    M1R1N5
    Conserved Domains (2) summary
    pfam00001
    Location:61298
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:63174
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    63922271..63923224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    63942798..63943751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    63780332..63781285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    64186690..64187643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    63707491..63708444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)