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ATF6 activating transcription factor 6 [ Canis lupus familiaris (dog) ]

Gene ID: 488660, updated on 1-Mar-2025
Official Symbol
ATF6provided by VGNC
Official Full Name
activating transcription factor 6provided by VGNC
Primary source
VGNC:VGNC:38212
See related
Ensembl:ENSCAFG00845027663 RGD:12419834
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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Try the new Transcripts and proteins table
See ATF6 in Genome Data Viewer
Location:
chromosome: 38
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 38 NC_051842.1 (20788925..20987730, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 38 NC_006620.4 (20758598..20956710, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 38 NC_049259.1 (21406602..21593774, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 38 NC_049298.1 (20761253..20959710, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 38 NC_049779.1 (21114892..21313427, complement)

Chromosome 38 - NC_051842.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102155091 Neighboring gene uncharacterized LOC111094525 Neighboring gene olfactomedin like 2B Neighboring gene uncharacterized LOC111094516 Neighboring gene dual specificity phosphatase 12 Neighboring gene Fc receptor like B

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
cyclic AMP-dependent transcription factor ATF-6 alpha

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051842.1 Reference ROS_Cfam_1.0

    Range
    20788925..20987730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038448589.1 → XP_038304517.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0SAG9
    Conserved Domains (2) summary
    PHA03378
    Location:143 → 255
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:298 → 349
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  2. XM_038448588.1 → XP_038304516.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C0P6G2, A0A8I3PUF6
    Related
    ENSCAFP00845038280.1, ENSCAFT00845048791.1
    Conserved Domains (2) summary
    PHA03378
    Location:161 → 273
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:316 → 367
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  3. XM_038448590.1 → XP_038304518.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0JJY4
    Conserved Domains (2) summary
    PHA03378
    Location:130 → 242
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:285 → 336
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  4. XM_038448591.1 → XP_038304519.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X4

    UniProtKB/TrEMBL
    A0A8P0PT09
    Conserved Domains (2) summary
    PHA03378
    Location:87 → 199
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:242 → 293
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  5. XM_038448592.1 → XP_038304520.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X5

    UniProtKB/TrEMBL
    A0A8P0PT09
    Conserved Domains (2) summary
    PHA03378
    Location:25 → 137
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:180 → 231
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

RNA

  1. XR_005308932.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049298.1 Alternate UMICH_Zoey_3.1

    Range
    20761253..20959710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038522482.1 → XP_038378410.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X2

  2. XM_038522480.1 → XP_038378408.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1

  3. XM_038522483.1 → XP_038378411.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X3

  4. XM_038522484.1 → XP_038378412.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X4

  5. XM_038522485.1 → XP_038378413.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X5

    Conserved Domains (2) summary
    PHA03378
    Location:25 → 137
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:180 → 231
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

RNA

  1. XR_005351819.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049779.1 Alternate UNSW_CanFamBas_1.0

    Range
    21114892..21313427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038650680.1 → XP_038506608.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X2

  2. XM_038650679.1 → XP_038506607.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1

  3. XM_038650681.1 → XP_038506609.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X3

  4. XM_038650682.1 → XP_038506610.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X4

  5. XM_038650683.1 → XP_038506611.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X5

    Conserved Domains (2) summary
    PHA03378
    Location:25 → 137
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:180 → 231
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

RNA

  1. XR_005419569.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049259.1 Alternate UU_Cfam_GSD_1.0

    Range
    21406602..21593774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038586263.1 → XP_038442191.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0JJY4

  2. XM_038586264.1 → XP_038442192.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X4

    UniProtKB/TrEMBL
    A0A8P0PT09

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006620.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    20758598..20956710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_545777.7 → XP_545777.3  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0SAG9
    Conserved Domains (1) summary
    cd14700
    Location:298 → 349
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  2. XM_005640861.4 → XP_005640918.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C0P6G2, A0A8C0YVP1, A0A8P0P781
    Conserved Domains (1) summary
    cd14700
    Location:316 → 367
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  3. XM_014111203.2 → XP_013966678.2  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0JJY4
    Conserved Domains (2) summary
    cd14700
    Location:285 → 336
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
    cl27975
    Location:130 → 242
    EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

  4. XM_014111204.3 → XP_013966679.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X4

    UniProtKB/TrEMBL
    A0A8P0PT09
    Conserved Domains (1) summary
    cd14700
    Location:242 → 293
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

  5. XM_038463902.1 → XP_038319830.1  cyclic AMP-dependent transcription factor ATF-6 alpha isoform X5

    UniProtKB/TrEMBL
    A0A8P0PT09
    Conserved Domains (2) summary
    PHA03378
    Location:25 → 137
    PHA03378; EBNA-3B; Provisional
    cd14700
    Location:180 → 231
    bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

RNA

  1. XR_002623866.2 RNA Sequence

Nucleotide Protein
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