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CD84 CD84 molecule [ Canis lupus familiaris (dog) ]

Gene ID: 488641, updated on 5-Mar-2024

Summary

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Official Symbol
CD84provided by VGNC
Official Full Name
CD84 moleculeprovided by VGNC
Primary source
VGNC:VGNC:38978
See related
Ensembl:ENSCAFG00845030390
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 38
Exon count:
8
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 38 NC_051842.1 (21820016..21843908)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 38 NC_006620.4 (21777612..21801443)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 38 NC_049259.1 (22530871..22554757)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 38 NC_049298.1 (21707065..21730941)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 38 NC_049779.1 (22121158..22144967)

Chromosome 38 - NC_051842.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene CD48 molecule Neighboring gene signaling lymphocytic activation molecule family member 1 Neighboring gene uncharacterized LOC119868071 Neighboring gene SLAM family member 6 Neighboring gene uncharacterized LOC106558353

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in T cell activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of interleukin-6 production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of monocyte chemotactic protein-1 production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of tumor necrosis factor production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of macrophage activation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLAM family member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051842.1 Reference ROS_Cfam_1.0

    Range
    21820016..21843908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038448675.1 → XP_038304603.1  SLAM family member 5 isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q6F8
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  2. XM_038448677.1 → XP_038304605.1  SLAM family member 5 isoform X4

    UniProtKB/TrEMBL
    A0A8I3Q6F8
    Related
    ENSCAFP00845042397.1, ENSCAFT00845053964.1
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  3. XM_038448674.1 → XP_038304602.1  SLAM family member 5 isoform X1

    UniProtKB/TrEMBL
    A0A8I3SCP0
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  4. XM_038448676.1 → XP_038304604.1  SLAM family member 5 isoform X3

    UniProtKB/TrEMBL
    A0A8I3SCP0
    Related
    ENSCAFP00845042416.1, ENSCAFT00845053987.1
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049298.1 Alternate UMICH_Zoey_3.1

    Range
    21707065..21730941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038522561.1 → XP_038378489.1  SLAM family member 5 isoform X2

    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  2. XM_038522563.1 → XP_038378491.1  SLAM family member 5 isoform X4

  3. XM_038522560.1 → XP_038378488.1  SLAM family member 5 isoform X1

    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  4. XM_038522562.1 → XP_038378490.1  SLAM family member 5 isoform X3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049779.1 Alternate UNSW_CanFamBas_1.0

    Range
    22121158..22144967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038650761.1 → XP_038506689.1  SLAM family member 5 isoform X2

    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  2. XM_038650763.1 → XP_038506691.1  SLAM family member 5 isoform X4

  3. XM_038650760.1 → XP_038506688.1  SLAM family member 5 isoform X1

    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  4. XM_038650762.1 → XP_038506690.1  SLAM family member 5 isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049259.1 Alternate UU_Cfam_GSD_1.0

    Range
    22530871..22554757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038586341.1 → XP_038442269.1  SLAM family member 5 isoform X2

    UniProtKB/TrEMBL
    A0A8P0NEH1
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  2. XM_038586343.1 → XP_038442271.1  SLAM family member 5 isoform X4

    UniProtKB/TrEMBL
    A0A8P0NEH1

  3. XM_038586340.1 → XP_038442268.1  SLAM family member 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0SQV4, A0A8P0SYJ7
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  4. XM_038586342.1 → XP_038442270.1  SLAM family member 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SQV4, A0A8P0SYJ7

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006620.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    21777612..21801443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038464067.1 → XP_038319995.1  SLAM family member 5 isoform X2

    UniProtKB/TrEMBL
    A0A8P0NEH1
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  2. XM_022415343.2 → XP_022271051.1  SLAM family member 5 isoform X4

    UniProtKB/TrEMBL
    A0A8P0NEH1
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:31 → 131
    Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  3. XM_038464066.1 → XP_038319994.1  SLAM family member 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C0SQV4, A0A8P0SYJ7
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:28 → 131
    Ig_SLAM-like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

  4. XM_005640884.4 → XP_005640941.1  SLAM family member 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C0SQV4, A0A8P0SYJ7
    Conserved Domains (2) summary
    pfam13927
    Location:136 → 199
    Ig_3; Immunoglobulin domain
    cd16842
    Location:31 → 131
    Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family
Nucleotide Protein
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