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USH2A usherin [ Canis lupus familiaris (dog) ]

Gene ID: 488593, updated on 5-Mar-2024

Summary

Official Symbol
USH2Aprovided by VGNC
Official Full Name
usherinprovided by VGNC
Primary source
VGNC:VGNC:48174
See related
Ensembl:ENSCAFG00845026494
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See USH2A in Genome Data Viewer
Location:
chromosome: 38
Exon count:
71
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 38 NC_051842.1 (11089431..11776697, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 38 NC_006620.4 (11100934..11787913, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 38 NC_049259.1 (11739438..12442329, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 38 NC_049298.1 (11101486..11789687, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 38 NC_049779.1 (11453699..12141739, complement)

Chromosome 38 - NC_051842.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102155620 Neighboring gene potassium channel tetramerization domain containing 3 Neighboring gene estrogen related receptor gamma Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119868037

Genomic regions, transcripts, and products

General protein information

Preferred Names
LOW QUALITY PROTEIN: usherin; usherin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051842.1 Reference ROS_Cfam_1.0

    Range
    11089431..11776697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038448764.1XP_038304692.1  usherin

    UniProtKB/TrEMBL
    A0A8I3Q290
    Related
    ENSCAFP00845037787.1, ENSCAFT00845048174.1
    Conserved Domains (10) summary
    smart00060
    Location:13631448
    FN3; Fibronectin type 3 domain
    smart00180
    Location:792831
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00560
    Location:143280
    LamGL; LamG-like jellyroll fold domain
    cd00055
    Location:897945
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00063
    Location:39624059
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00110
    Location:15161675
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00041
    Location:11501229
    fn3; Fibronectin type III domain
    pfam00053
    Location:638688
    Laminin_EGF; Laminin EGF domain
    cl02806
    Location:313513
    Laminin_N; Laminin N-terminal (Domain VI)
    cl21522
    Location:10551129
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049298.1 Alternate UMICH_Zoey_3.1

    Range
    11101486..11789687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038522657.1XP_038378585.1  LOW QUALITY PROTEIN: usherin

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049779.1 Alternate UNSW_CanFamBas_1.0

    Range
    11453699..12141739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038650847.1XP_038506775.1  usherin

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049259.1 Alternate UU_Cfam_GSD_1.0

    Range
    11739438..12442329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038586435.1XP_038442363.1  LOW QUALITY PROTEIN: usherin

    UniProtKB/TrEMBL
    A0A8P0ND16

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006620.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    11100934..11787913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_545710.5XP_545710.2  usherin

    UniProtKB/TrEMBL
    A0A8P0ND16
    Conserved Domains (9) summary
    smart00060
    Location:13631448
    FN3; Fibronectin type 3 domain
    smart00180
    Location:792831
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    smart00560
    Location:143280
    LamGL; LamG-like jellyroll fold domain
    cd00055
    Location:897945
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00063
    Location:39624059
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00110
    Location:15161675
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00041
    Location:42664338
    fn3; Fibronectin type III domain
    pfam00053
    Location:638688
    Laminin_EGF; Laminin EGF domain
    cl02806
    Location:313513
    Laminin_N; Laminin N-terminal (Domain VI)