U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RBM20 RNA binding motif protein 20 [ Canis lupus familiaris (dog) ]

Gene ID: 486887, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
RBM20provided by VGNC
Official Full Name
RNA binding motif protein 20provided by VGNC
Primary source
VGNC:VGNC:45414
See related
Ensembl:ENSCAFG00845028870
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RBM20 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (22616330..22687337)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (22243625..22314911)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (22316433..22387379)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (22175756..22246804)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (22182299..22253611)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866588 Neighboring gene uncharacterized LOC119866587 Neighboring gene U4 spliceosomal RNA Neighboring gene programmed cell death 4 Neighboring gene BBSome interacting protein 1 Neighboring gene SHOC2 leucine rich repeat scaffold protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable RNA-binding protein 20; RNA-binding protein 20

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    22616330..22687337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440542.1 → XP_038296470.1  RNA-binding protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NZA9, A0A8I3QR14
    Related
    ENSCAFP00845040152.1, ENSCAFT00845051195.1
    Conserved Domains (4) summary
    smart00451
    Location:1126 → 1160
    ZnF_U1; U1-like zinc finger
    pfam09507
    Location:715 → 865
    CDC27; DNA polymerase subunit Cdc27
    pfam15440
    Location:599 → 1032
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:485 → 560
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

  2. XM_038440543.1 → XP_038296471.1  RNA-binding protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A8I3QI90
    Related
    ENSCAFP00845040216.1, ENSCAFT00845051274.1
    Conserved Domains (4) summary
    smart00451
    Location:1107 → 1141
    ZnF_U1; U1-like zinc finger
    pfam09507
    Location:696 → 846
    CDC27; DNA polymerase subunit Cdc27
    pfam15440
    Location:580 → 1013
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:466 → 541
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

  3. XM_038440544.1 → XP_038296472.1  RNA-binding protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NZA9
    Conserved Domains (4) summary
    smart00451
    Location:1007 → 1041
    ZnF_U1; U1-like zinc finger
    pfam09507
    Location:596 → 746
    CDC27; DNA polymerase subunit Cdc27
    pfam15440
    Location:480 → 913
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:366 → 441
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    22175756..22246804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515170.1 → XP_038371098.1  RNA-binding protein 20 isoform X1

    Conserved Domains (4) summary
    PTZ00449
    Location:700 → 1028
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00451
    Location:1126 → 1160
    ZnF_U1; U1-like zinc finger
    pfam15440
    Location:599 → 858
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:485 → 560
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

  2. XM_038515171.1 → XP_038371099.1  RNA-binding protein 20 isoform X2

    Conserved Domains (4) summary
    PTZ00449
    Location:681 → 1009
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00451
    Location:1107 → 1141
    ZnF_U1; U1-like zinc finger
    pfam15440
    Location:580 → 839
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:466 → 541
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

  3. XM_038515172.1 → XP_038371100.1  RNA-binding protein 20 isoform X3

    Conserved Domains (4) summary
    PTZ00449
    Location:581 → 909
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00451
    Location:1007 → 1041
    ZnF_U1; U1-like zinc finger
    pfam15440
    Location:480 → 739
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:366 → 441
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    22182299..22253611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642953.1 → XP_038498881.1  RNA-binding protein 20 isoform X1

  2. XM_038642955.1 → XP_038498883.1  RNA-binding protein 20 isoform X3

  3. XM_038642954.1 → XP_038498882.1  RNA-binding protein 20 isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    22316433..22387379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578771.1 → XP_038434699.1  RNA-binding protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NZA9

  2. XM_038578773.1 → XP_038434701.1  RNA-binding protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A8I3QI90

  3. XM_038578774.1 → XP_038434702.1  RNA-binding protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NZA9

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22243625..22314911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038460531.1 → XP_038316459.1  RNA-binding protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8C0NZA9, A0A8C0T832, A0A8P0SFN1
    Conserved Domains (4) summary
    PTZ00449
    Location:700 → 1028
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00451
    Location:1126 → 1160
    ZnF_U1; U1-like zinc finger
    pfam15440
    Location:599 → 858
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:485 → 560
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

  2. XM_038460532.1 → XP_038316460.1  RNA-binding protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A8P0TDX3
    Conserved Domains (4) summary
    PTZ00449
    Location:681 → 1009
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00451
    Location:1107 → 1141
    ZnF_U1; U1-like zinc finger
    pfam15440
    Location:580 → 839
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:466 → 541
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)

  3. XM_038460533.1 → XP_038316461.1  RNA-binding protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NZA9
    Conserved Domains (4) summary
    PTZ00449
    Location:581 → 909
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    smart00451
    Location:1007 → 1041
    ZnF_U1; U1-like zinc finger
    pfam15440
    Location:480 → 739
    THRAP3_BCLAF1; THRAP3/BCLAF1 family
    cd12685
    Location:366 → 441
    RRM_RBM20; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 20 (RBM20)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.