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RARG retinoic acid receptor gamma [ Canis lupus familiaris (dog) ]

Gene ID: 486508, updated on 17-Aug-2024

Summary

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Official Symbol
RARGprovided by VGNC
Official Full Name
retinoic acid receptor gammaprovided by VGNC
Primary source
VGNC:VGNC:45353
See related
Ensembl:ENSCAFG00845021228
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 27
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (1961941..1982664)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (44271142..44291835, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (44671821..44692522, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (1980967..2000875)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (1965173..1985840)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L30 pseudogene Neighboring gene extra spindle pole bodies like 1, separase Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC111092799 Neighboring gene major facilitator superfamily domain containing 5 Neighboring gene integrin subunit beta 7 Neighboring gene zinc finger protein 740 Neighboring gene cysteine sulfinic acid decarboxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: retinoic acid receptor gamma; retinoic acid receptor gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    1961941..1982664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438083.1 → XP_038294011.1  retinoic acid receptor gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0L6S5, A0A8C0PEA6, A0A8I3PMF5, A0A8P0SCD1
    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_038438084.1 → XP_038294012.1  retinoic acid receptor gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0L6S5, A0A8C0PEA6, A0A8I3PMF5, A0A8P0SCD1
    Related
    ENSCAFP00845029346.1, ENSCAFT00845037457.1
    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  3. XM_038438081.1 → XP_038294009.1  retinoic acid receptor gamma isoform X5

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_038438079.1 → XP_038294007.1  retinoic acid receptor gamma isoform X1

    UniProtKB/TrEMBL
    A0A8C0TFI7
    Conserved Domains (2) summary
    cd06937
    Location:177 → 382
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:74 → 154
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  5. XM_038438078.1 → XP_038294006.1  retinoic acid receptor gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:177 → 407
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:74 → 154
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  6. XM_038438080.1 → XP_038294008.1  retinoic acid receptor gamma isoform X4

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:171 → 401
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:68 → 148
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  7. XM_038438082.1 → XP_038294010.1  retinoic acid receptor gamma isoform X5

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    1980967..2000875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512779.1 → XP_038368707.1  LOW QUALITY PROTEIN: retinoic acid receptor gamma isoform X3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    1965173..1985840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640541.1 → XP_038496469.1  retinoic acid receptor gamma isoform X3

    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_038640542.1 → XP_038496470.1  retinoic acid receptor gamma isoform X3

    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  3. XM_038640539.1 → XP_038496467.1  retinoic acid receptor gamma isoform X5

    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_038640537.1 → XP_038496465.1  retinoic acid receptor gamma isoform X1

    Conserved Domains (2) summary
    cd06937
    Location:177 → 382
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:74 → 154
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  5. XM_038640536.1 → XP_038496464.1  retinoic acid receptor gamma isoform X2

    Conserved Domains (2) summary
    cd06937
    Location:177 → 407
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:74 → 154
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  6. XM_038640538.1 → XP_038496466.1  retinoic acid receptor gamma isoform X4

    Conserved Domains (2) summary
    cd06937
    Location:171 → 401
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:68 → 148
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  7. XM_038640540.1 → XP_038496468.1  retinoic acid receptor gamma isoform X5

    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    44671821..44692522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038577764.1 → XP_038433692.1  retinoic acid receptor gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0L6S5, A0A8C0PEA6, A0A8I3PMF5, A0A8P0SCD1
    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_038577763.1 → XP_038433691.1  retinoic acid receptor gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0L6S5, A0A8C0PEA6, A0A8I3PMF5, A0A8P0SCD1
    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  3. XM_038577767.1 → XP_038433695.1  retinoic acid receptor gamma isoform X5

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_038577762.1 → XP_038433690.1  retinoic acid receptor gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:177 → 407
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:74 → 154
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  5. XM_038577765.1 → XP_038433693.1  retinoic acid receptor gamma isoform X4

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:171 → 401
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:68 → 148
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  6. XM_038577768.1 → XP_038433696.1  retinoic acid receptor gamma isoform X5

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    44271142..44291835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038460154.1 → XP_038316082.1  retinoic acid receptor gamma isoform X3

    UniProtKB/TrEMBL
    A0A8C0L6S5, A0A8C0PEA6, A0A8I3PMF5, A0A8P0SCD1
    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  2. XM_005636777.4 → XP_005636834.1  retinoic acid receptor gamma isoform X3

    See identical proteins and their annotated locations for XP_005636834.1

    UniProtKB/TrEMBL
    A0A8C0L6S5, A0A8C0PEA6, A0A8I3PMF5, A0A8P0SCD1
    Conserved Domains (2) summary
    cd06937
    Location:188 → 418
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:85 → 165
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  3. XM_005636780.4 → XP_005636837.1  retinoic acid receptor gamma isoform X5

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_853188.6 → XP_858281.4  retinoic acid receptor gamma isoform X2

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:177 → 407
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:74 → 154
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  5. XM_022411224.2 → XP_022266932.1  retinoic acid receptor gamma isoform X4

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:171 → 401
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:68 → 148
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  6. XM_014108423.3 → XP_013963898.1  retinoic acid receptor gamma isoform X5

    UniProtKB/TrEMBL
    A0A8C0PN80
    Conserved Domains (2) summary
    cd06937
    Location:116 → 346
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:13 → 93
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
Nucleotide Protein
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