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PER2 period circadian regulator 2 [ Canis lupus familiaris (dog) ]

Gene ID: 486180, updated on 17-Aug-2024

Summary

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Official Symbol
PER2provided by VGNC
Official Full Name
period circadian regulator 2provided by VGNC
Primary source
VGNC:VGNC:44421
See related
Ensembl:ENSCAFG00845029967
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PER2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (49102140..49147315, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (49211912..49257033, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (48998242..49043270, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (48977242..49022398, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (48765877..48806293, complement)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119865979 Neighboring gene uncharacterized LOC119865981 Neighboring gene hes family bHLH transcription factor 6 Neighboring gene uncharacterized LOC106557800 Neighboring gene uncharacterized LOC111092397 Neighboring gene TRAF3 interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
period circadian protein homolog 2; LOW QUALITY PROTEIN: period circadian protein homolog 2
Names
period circadian clock 2
period homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    49102140..49147315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038435933.1 → XP_038291861.1  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0NPM9
    Conserved Domains (3) summary
    PHA03247
    Location:801 → 1087
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1048 → 1241
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:326 → 427
    PAS_11; PAS domain

  2. XM_038435932.1 → XP_038291860.1  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0NPM9
    Related
    ENSCAFP00845041690.1, ENSCAFT00845053096.1
    Conserved Domains (3) summary
    PHA03247
    Location:801 → 1087
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1048 → 1241
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:326 → 427
    PAS_11; PAS domain

  3. XM_038435934.1 → XP_038291862.1  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0NPM9
    Conserved Domains (3) summary
    PHA03247
    Location:801 → 1087
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1048 → 1241
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:326 → 427
    PAS_11; PAS domain

RNA

  1. XR_005302062.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    48977242..49022398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038510855.1 → XP_038366783.1  period circadian protein homolog 2

  2. XM_038510854.1 → XP_038366782.1  period circadian protein homolog 2

  3. XM_038510856.1 → XP_038366784.1  period circadian protein homolog 2

RNA

  1. XR_005345047.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    48765877..48806293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638590.1 → XP_038494518.1  LOW QUALITY PROTEIN: period circadian protein homolog 2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    48998242..49043270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038574354.1 → XP_038430282.1  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0NPM9

  2. XM_038574353.1 → XP_038430281.1  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0NPM9

  3. XM_038574355.1 → XP_038430283.1  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0NPM9

RNA

  1. XR_005378911.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    49211912..49257033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014107669.3 → XP_013963144.2  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0TDX2
    Conserved Domains (3) summary
    PHA03247
    Location:801 → 1087
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1048 → 1241
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:326 → 427
    PAS_11; PAS domain

  2. XM_543306.6 → XP_543306.3  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0TDX2
    Conserved Domains (3) summary
    PHA03247
    Location:801 → 1087
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1048 → 1241
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:326 → 427
    PAS_11; PAS domain

  3. XM_005635926.4 → XP_005635983.2  period circadian protein homolog 2

    UniProtKB/TrEMBL
    A0A8C0TDX2
    Conserved Domains (3) summary
    PHA03247
    Location:801 → 1087
    PHA03247; large tegument protein UL36; Provisional
    pfam12114
    Location:1048 → 1241
    Period_C; Period protein 2/3C-terminal region
    pfam14598
    Location:326 → 427
    PAS_11; PAS domain

RNA

  1. XR_002618994.2 RNA Sequence

Nucleotide Protein
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