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HPS3 HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 485709, updated on 5-Mar-2024

Summary

Official Symbol
HPS3provided by VGNC
Official Full Name
HPS3 biogenesis of lysosomal organelles complex 2 subunit 1provided by VGNC
Primary source
VGNC:VGNC:41775
See related
Ensembl:ENSCAFG00845023096
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See HPS3 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
17
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (44566353..44606057)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (43804492..43843689)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (44457634..44496845)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (44155109..44194768)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (44203599..44242773)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene helicase like transcription factor Neighboring gene 60S ribosomal protein L15-like Neighboring gene uncharacterized LOC111091984 Neighboring gene ceruloplasmin Neighboring gene ceruloplasmin and hephaestin like 1

Genomic regions, transcripts, and products

General protein information

Preferred Names
Hermansky-Pudlak syndrome 3 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    44566353..44606057
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038432641.1XP_038288569.1  Hermansky-Pudlak syndrome 3 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0L327, A0A8C0S4K0, A0A8C0S4Y7, A0A8I3PDG5
    Related
    ENSCAFP00845032031.1, ENSCAFT00845040902.1
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:6521001
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  2. XM_038432643.1XP_038288571.1  Hermansky-Pudlak syndrome 3 protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0MM68, A0A8C0S4Y7, A0A8I3S3J8
    Related
    ENSCAFP00845032276.1, ENSCAFT00845041181.1
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652932
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  3. XM_038432642.1XP_038288570.1  Hermansky-Pudlak syndrome 3 protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0S4Y7, A0A8C0S5F5, A0A8I3PLJ1
    Related
    ENSCAFP00845032152.1, ENSCAFT00845041036.1
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652938
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  4. XM_038432644.1XP_038288572.1  Hermansky-Pudlak syndrome 3 protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0S4Y7
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652876
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  5. XM_038432645.1XP_038288573.1  Hermansky-Pudlak syndrome 3 protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0S4Y7
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652807
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal

RNA

  1. XR_005300297.1 RNA Sequence

  2. XR_005300300.1 RNA Sequence

  3. XR_005300302.1 RNA Sequence

  4. XR_005300299.1 RNA Sequence

  5. XR_005300298.1 RNA Sequence

  6. XR_005300301.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    44155109..44194768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507938.1XP_038363866.1  Hermansky-Pudlak syndrome 3 protein isoform X1

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:6521001
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  2. XM_038507940.1XP_038363868.1  Hermansky-Pudlak syndrome 3 protein isoform X3

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652932
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  3. XM_038507939.1XP_038363867.1  Hermansky-Pudlak syndrome 3 protein isoform X2

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652938
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  4. XM_038507941.1XP_038363869.1  Hermansky-Pudlak syndrome 3 protein isoform X4

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652876
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  5. XM_038507942.1XP_038363870.1  Hermansky-Pudlak syndrome 3 protein isoform X5

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652807
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal

RNA

  1. XR_005343391.1 RNA Sequence

  2. XR_005343394.1 RNA Sequence

  3. XR_005343396.1 RNA Sequence

  4. XR_005343393.1 RNA Sequence

  5. XR_005343392.1 RNA Sequence

  6. XR_005343395.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    44203599..44242773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038635372.1XP_038491300.1  Hermansky-Pudlak syndrome 3 protein isoform X1

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:6521001
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  2. XM_038635374.1XP_038491302.1  Hermansky-Pudlak syndrome 3 protein isoform X3

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652932
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  3. XM_038635373.1XP_038491301.1  Hermansky-Pudlak syndrome 3 protein isoform X2

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652938
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  4. XM_038635375.1XP_038491303.1  Hermansky-Pudlak syndrome 3 protein isoform X4

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652876
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  5. XM_038635376.1XP_038491304.1  Hermansky-Pudlak syndrome 3 protein isoform X5

    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652807
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal

RNA

  1. XR_005411108.1 RNA Sequence

  2. XR_005411111.1 RNA Sequence

  3. XR_005411114.1 RNA Sequence

  4. XR_005411110.1 RNA Sequence

  5. XR_005411109.1 RNA Sequence

  6. XR_005411112.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    44457634..44496845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038571180.1XP_038427108.1  Hermansky-Pudlak syndrome 3 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0L327, A0A8C0S4K0, A0A8C0S4Y7, A0A8I3PDG5
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:6521001
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  2. XM_038571182.1XP_038427110.1  Hermansky-Pudlak syndrome 3 protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0MM68, A0A8C0S4Y7, A0A8I3S3J8
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652932
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  3. XM_038571181.1XP_038427109.1  Hermansky-Pudlak syndrome 3 protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0S4Y7, A0A8C0S5F5, A0A8I3PLJ1
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652938
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  4. XM_038571183.1XP_038427111.1  Hermansky-Pudlak syndrome 3 protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0S4Y7
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652876
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  5. XM_038571184.1XP_038427112.1  Hermansky-Pudlak syndrome 3 protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0S4Y7
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652807
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal

RNA

  1. XR_005377173.1 RNA Sequence

  2. XR_005377176.1 RNA Sequence

  3. XR_005377178.1 RNA Sequence

  4. XR_005377175.1 RNA Sequence

  5. XR_005377174.1 RNA Sequence

  6. XR_005377177.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    43804492..43843689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_542830.7XP_542830.3  Hermansky-Pudlak syndrome 3 protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0L327, A0A8C0S4K0, A0A8C0S4Y7, A0A8I3PDG5
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:6521001
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  2. XM_005634557.4XP_005634614.1  Hermansky-Pudlak syndrome 3 protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0MM68, A0A8C0S4Y7, A0A8I3S3J8
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652932
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  3. XM_022408741.2XP_022264449.1  Hermansky-Pudlak syndrome 3 protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0S4Y7, A0A8C0S5F5, A0A8I3PLJ1
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652938
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  4. XM_038457316.1XP_038313244.1  Hermansky-Pudlak syndrome 3 protein isoform X4

    UniProtKB/TrEMBL
    A0A8C0S4Y7
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652876
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal
  5. XM_038457317.1XP_038313245.1  Hermansky-Pudlak syndrome 3 protein isoform X5

    UniProtKB/TrEMBL
    A0A8C0S4Y7
    Conserved Domains (3) summary
    pfam14761
    Location:3212
    HPS3_N; Hermansky-Pudlak syndrome 3
    pfam14762
    Location:255641
    HPS3_Mid; Hermansky-Pudlak syndrome 3, middle region
    pfam14763
    Location:652807
    HPS3_C; Hermansky-Pudlak syndrome 3, C-terminal

RNA

  1. XR_295369.4 RNA Sequence

  2. XR_295370.4 RNA Sequence

  3. XR_002618321.2 RNA Sequence

  4. XR_002618319.2 RNA Sequence

  5. XR_002618318.2 RNA Sequence

  6. XR_002618320.2 RNA Sequence