U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

UBP1 upstream binding protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 485572, updated on 25-Jul-2026
Official Symbol
UBP1provided by VGNC
Official Full Name
upstream binding protein 1provided by VGNC
Primary source
VGNC:VGNC:52909
See related
Ensembl:ENSCAFG00845022384 RGD:12327636
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See UBP1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (3700481..3751218)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (3489891..3542348)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (3641049..3693509)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (3540526..3592947)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (3667423..3719978)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111091904 Neighboring gene cytoplasmic linker associated protein 2 Neighboring gene transcription initiation factor TFIID subunit 9-like Neighboring gene F-box and leucine rich repeat protein 2 Neighboring gene aminoacyl tRNA synthase complex-interacting multifunctional protein 2-like Neighboring gene epithelial splicing regulatory protein 1-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A lack of association between polymorphisms of three positional candidate genes (CLASP2 , UBP1, and FBXL2) and canine disorder of sexual development (78,XX; SRY -negative). Salamon S, et al. Sex Dev, 2014. PMID 24994500
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Three positional candidate genes (CLASP2, UBP1, and FBXL2) were selected in silico in the search for polymorphisms in 7 testicular or ovotesticular XX disorders of sexual development(DSD) dogs, 8 XX DSD dogs of unknown cause.
    Title: A lack of association between polymorphisms of three positional candidate genes (CLASP2 , UBP1, and FBXL2) and canine disorder of sexual development (78,XX; SRY -negative).
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
upstream-binding protein 1
Names
upstream binding protein 1 (LBP-1a)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    3700481..3751218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038431760.1 → XP_038287688.1  upstream-binding protein 1 isoform X4

    Conserved Domains (2) summary
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor
    cl15755
    Location:369 → 425
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_038431757.1 → XP_038287685.1  upstream-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0JLM9, A0A8I3PK54
    Conserved Domains (2) summary
    cd09588
    Location:369 → 435
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  3. XM_038431759.1 → XP_038287687.1  upstream-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QTY3, A0A8I3PBD7
    Conserved Domains (2) summary
    cd09588
    Location:333 → 399
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  4. XM_038431758.1 → XP_038287686.1  upstream-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I3PK54
    Related
    ENSCAFP00845031009.1, ENSCAFT00845039574.1
    Conserved Domains (2) summary
    cd09588
    Location:334 → 400
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:14 → 219
    CP2; CP2 transcription factor

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    3540526..3592947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507107.1 → XP_038363035.1  

    Conserved Domains (2) summary
    cd09588
    Location:369 → 435
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  2. XM_038507108.1 → XP_038363036.1  

    Conserved Domains (2) summary
    cd09588
    Location:333 → 399
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  3. XM_038507109.1 → XP_038363037.1  

    Conserved Domains (2) summary
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor
    cl15755
    Location:369 → 425
    SAM_superfamily; SAM (Sterile alpha motif )

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    3667423..3719978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038634498.1 → XP_038490426.1  

    Conserved Domains (2) summary
    cd09588
    Location:369 → 435
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  2. XM_038634499.1 → XP_038490427.1  

    Conserved Domains (2) summary
    cd09588
    Location:333 → 399
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  3. XM_038634500.1 → XP_038490428.1  

    Conserved Domains (2) summary
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor
    cl15755
    Location:369 → 425
    SAM_superfamily; SAM (Sterile alpha motif )

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    3641049..3693509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038570312.1 → XP_038426240.1  upstream-binding protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A8C0JLM9, A0A8I3PK54
    Conserved Domains (2) summary
    cd09588
    Location:369 → 435
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  2. XM_038570313.1 → XP_038426241.1  upstream-binding protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A8C0QTY3, A0A8I3PBD7
    Conserved Domains (2) summary
    cd09588
    Location:333 → 399
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  3. XM_038570314.1 → XP_038426242.1  upstream-binding protein 1 isoform X13

    Conserved Domains (2) summary
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor
    cl15755
    Location:369 → 425
    SAM_superfamily; SAM (Sterile alpha motif )

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    3489891..3542348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005634202.4 → XP_005634259.1  upstream-binding protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A8C0JLM9, A0A8I3PK54
    Conserved Domains (2) summary
    cd09588
    Location:369 → 435
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  2. XM_003433178.5 → XP_003433226.1  upstream-binding protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A8C0QTY3, A0A8I3PBD7
    Conserved Domains (2) summary
    cd09588
    Location:333 → 399
    SAM_LBP1; SAM domain of LBP1 (UBP1) transcription factors
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor

  3. XM_022408428.2 → XP_022264136.1  upstream-binding protein 1 isoform X16

    Conserved Domains (2) summary
    pfam04516
    Location:49 → 254
    CP2; CP2 transcription factor
    cl15755
    Location:369 → 425
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials