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PICST_11262 RNA polymerase II transcription factor [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4851739, updated on 21-Dec-2023

Summary

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Gene symbol
PICST_11262
Gene description
RNA polymerase II transcription factor
Locus tag
PICST_11262
Gene type
protein coding
RNA name
RNA polymerase II transcription factor
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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See PICST_11262 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_009068.1 (2703910..2705475, complement)

Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L19 Neighboring gene Phosphoribosylamidoimidazole-succinocarboxamide synthase Neighboring gene Zn-finger protein Neighboring gene Ca2+/calmodulin-dependent protein kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
RNA polymerase II transcription factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009068.1 Reference assembly

    Range
    2703910..2705475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001387048.1 → XP_001387085.2  RNA polymerase II transcription factor, partial [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001387085.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3GHJ0
    Conserved Domains (1) summary
    cl02603
    Location:88 → 183
    TEA; TEA/ATTS domain family
Nucleotide Protein
Heading Accession and Version

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