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TRAPPC5 trafficking protein particle complex subunit 5 [ Canis lupus familiaris (dog) ]

Gene ID: 484997, updated on 5-Mar-2024

Summary

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Official Symbol
TRAPPC5provided by VGNC
Official Full Name
trafficking protein particle complex subunit 5provided by VGNC
Primary source
VGNC:VGNC:47784
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (52974113..52976084)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (52248826..52250788)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (52852667..52854638)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (52177817..52179778)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (52621433..52623395)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene resistin Neighboring gene mast cell expressed membrane protein 1 Neighboring gene Fc epsilon receptor II Neighboring gene C-type lectin domain family 4 member G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPPI protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of TRAPPII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of TRAPPIII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 5
Names
trafficking protein particle complex 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    52974113..52976084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038428781.1 → XP_038284709.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  2. XM_038428783.1 → XP_038284711.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  3. XM_038428784.1 → XP_038284712.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  4. XM_038428785.1 → XP_038284713.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  5. XM_038428786.1 → XP_038284714.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    52177817..52179778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038504417.1 → XP_038360345.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  2. XM_038504418.1 → XP_038360346.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  3. XM_038504419.1 → XP_038360347.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  4. XM_038504420.1 → XP_038360348.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  5. XM_038504421.1 → XP_038360349.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    52621433..52623395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038631608.1 → XP_038487536.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  2. XM_038631609.1 → XP_038487537.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  3. XM_038631610.1 → XP_038487538.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  4. XM_038631611.1 → XP_038487539.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  5. XM_038631612.1 → XP_038487540.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    52852667..52854638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038567460.1 → XP_038423388.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  2. XM_038567461.1 → XP_038423389.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  3. XM_038567462.1 → XP_038423390.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  4. XM_038567463.1 → XP_038423391.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  5. XM_038567464.1 → XP_038423392.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    52248826..52250788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005632939.4 → XP_005632996.1  trafficking protein particle complex subunit 5

    See identical proteins and their annotated locations for XP_005632996.1

    UniProtKB/TrEMBL
    E2RBU4
    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  2. XM_038455743.1 → XP_038311671.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  3. XM_038455744.1 → XP_038311672.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  4. XM_005632940.4 → XP_005632997.1  trafficking protein particle complex subunit 5

    See identical proteins and their annotated locations for XP_005632997.1

    UniProtKB/TrEMBL
    E2RBU4
    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

  5. XM_038455745.1 → XP_038311673.1  trafficking protein particle complex subunit 5

    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
Nucleotide Protein
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