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SEMA3F semaphorin 3F [ Canis lupus familiaris (dog) ]

Gene ID: 484763, updated on 25-Jul-2026
Official Symbol
SEMA3Fprovided by VGNC
Official Full Name
semaphorin 3Fprovided by VGNC
Primary source
VGNC:VGNC:45992
See related
Ensembl:ENSCAFG00845023095 RGD:12337226
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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Try the new Transcripts and proteins table
See SEMA3F in Genome Data Viewer
Location:
chromosome: 20
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (39491876..39521715, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (39056637..39085160, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (39543271..39573112, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (38859427..38889253, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (39263538..39293588, complement)

Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 3 Neighboring gene G protein subunit alpha transducin 1 Neighboring gene uncharacterized LOC119864690 Neighboring gene RNA binding motif protein 5 Neighboring gene RNA binding motif protein 6

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
semaphorin-3F

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051824.1 Reference ROS_Cfam_1.0

    Range
    39491876..39521715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038427704.1 → XP_038283632.1  semaphorin-3F isoform X2

    UniProtKB/TrEMBL
    A0A8C0LC24, A0A8C0R5P5, A0A8I3PE62
    Related
    ENSCAFP00845032050.1, ENSCAFT00845040922.1
    Conserved Domains (3) summary
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:516 → 553
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:577 → 666
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  2. XM_038427702.1 → XP_038283630.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCP0, A0A8C0R5P5, A0A8I3PUI4
    Related
    ENSCAFP00845031936.1, ENSCAFT00845040791.1
    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  3. XM_038427703.1 → XP_038283631.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCP0, A0A8C0R5P5, A0A8I3PUI4
    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049280.1 Alternate UMICH_Zoey_3.1

    Range
    38859427..38889253 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038503390.1 → XP_038359318.1  

    Conserved Domains (3) summary
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:516 → 553
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:577 → 666
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  2. XM_038503388.1 → XP_038359316.1  

    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  3. XM_038503389.1 → XP_038359317.1  

    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

    Range
    39263538..39293588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038630541.1 → XP_038486469.1  

    Conserved Domains (3) summary
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:516 → 553
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:577 → 666
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  2. XM_038630539.1 → XP_038486467.1  

    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  3. XM_038630540.1 → XP_038486468.1  

    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

    Range
    39543271..39573112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038566391.1 → XP_038422319.1  semaphorin-3F isoform X2

    UniProtKB/TrEMBL
    A0A8C0LC24, A0A8C0R5P5, A0A8I3PE62
    Conserved Domains (3) summary
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:516 → 553
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:577 → 666
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  2. XM_038566389.1 → XP_038422317.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCP0, A0A8C0R5P5, A0A8I3PUI4
    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  3. XM_038566390.1 → XP_038422318.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCP0, A0A8C0R5P5, A0A8I3PUI4
    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39056637..39085160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038455423.1 → XP_038311351.1  semaphorin-3F isoform X2

    UniProtKB/TrEMBL
    A0A8C0LC24, A0A8C0R5P5, A0A8I3PE62
    Conserved Domains (3) summary
    cd11254
    Location:48 → 517
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:516 → 553
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:577 → 666
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

  2. XM_038455422.1 → XP_038311350.1  semaphorin-3F isoform X1

    UniProtKB/TrEMBL
    A0A8C0LCP0, A0A8C0R5P5, A0A8I3PUI4
    Conserved Domains (3) summary
    cd11254
    Location:48 → 548
    Sema_3F; The Sema domain, a protein interacting module, of semaphorin 3F (Sema3F)
    smart00423
    Location:547 → 584
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd05871
    Location:608 → 697
    Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
Nucleotide Protein
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