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URA3 Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) (PYRF) [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4840866, updated on 21-Dec-2023

Summary

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Gene symbol
URA3
Gene description
Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) (PYRF)
Locus tag
PICST_50417
Gene type
protein coding
RNA name
Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) (PYRF)
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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Genomic context

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Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_009048.1 (357829..358632, complement)

Chromosome 8 - NC_009048.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene mitochondrial carrier protein Neighboring gene GDP/GTP exchange factor for ARF Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009048.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables orotidine-5'-phosphate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' UMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) (PYRF)
XP_001386655.1
  • go_function orotidine-5'-phosphate decarboxylase activity
    go_process 'de novo' pyrimidine base biosynthesis

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009048.1 Reference assembly

    Range
    357829..358632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001386618.1 → XP_001386655.1  Orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) (Uridine 5'-monophosphate synthase) (UMP synthase) (PYRF) [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001386655.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A3M000, P49434
    Conserved Domains (1) summary
    TIGR01740
    Location:33 → 253
    pyrF; orotidine 5'-phosphate decarboxylase, subfamily 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49434.1

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