U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PICST_60945 hypothetical protein [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4839247, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
PICST_60945
Gene description
hypothetical protein
Locus tag
PICST_60945
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PICST_60945 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_009045.1 (1039445..1040695, complement)

Chromosome 5 - NC_009045.1Genomic Context describing neighboring genes Neighboring gene branched-chain amino acid transaminase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene 4-aminobutyrate aminotransferase (GABA transaminase)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_009045.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor complex adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of heterotrimeric G-protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009045.1 Reference assembly

    Range
    1039445..1040695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001385172.1 → XP_001385209.2  predicted protein [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001385209.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A3LVU6
    Conserved Domains (3) summary
    COG2319
    Location:56 → 399
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:60 → 398
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:75 → 108
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials