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XYL1 NAD(P)H-dependent D-xylose reductase (XR) [ Scheffersomyces stipitis CBS 6054 ]

Gene ID: 4839234, updated on 9-Jul-2025
Gene symbol
XYL1
Gene description
NAD(P)H-dependent D-xylose reductase (XR)
Locus tag
PICST_89614
Gene type
protein coding
RNA name
NAD(P)H-dependent D-xylose reductase (XR)
RefSeq status
PROVISIONAL
Organism
Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
Orthologs
budding yeast Candida albicans all
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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_009045.1 (898459..899484, complement)

Chromosome 5 - NC_009045.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Trimethyllysine dioxygenase (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Neighboring gene transcription factor involved in glucose repression Neighboring gene STB4; binds Sin3p in two-hybrid assay

Genomic Sequence:
NC_009045.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Insights from modeling the 3D structure of NAD(P)H-dependent D-xylose reductase of Pichia stipitis and its binding interactions with NAD and NADP. Wang JF, et al. Biochem Biophys Res Commun, 2007 Jul 27. PMID 17544374
  2. Comparison of SHF and SSF processes from steam-exploded wheat straw for ethanol production by xylose-fermenting and robust glucose-fermenting Saccharomyces cerevisiae strains. Tomás-Pejó E, et al. Biotechnol Bioeng, 2008 Aug 15. PMID 18383076
  3. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Introduced in S.cerevisiae F12, succesfully enable it to metabolize xylose from cereal straw
    Title: Comparison of SHF and SSF processes from steam-exploded wheat straw for ethanol production by xylose-fermenting and robust glucose-fermenting Saccharomyces cerevisiae strains.
  2. The 3D structure of NAD(P)H-dependent D-xylose reductase was modeled, and the binding pockets of the enzyme for its ligands NAD and NADP were defined. [XYLO]
    Title: Insights from modeling the 3D structure of NAD(P)H-dependent D-xylose reductase of Pichia stipitis and its binding interactions with NAD and NADP.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-xylose reductase (NADPH) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Names
NAD(P)H-dependent D-xylose reductase (XR)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009045.1 Reference assembly

    Range
    898459..899484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001385144.1 → XP_001385181.1  NAD(P)H-dependent D-xylose reductase (XR) [Scheffersomyces stipitis CBS 6054]

    See identical proteins and their annotated locations for XP_001385181.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A3LVN7, P31867
    UniProtKB/TrEMBL
    E5G6H3
    Conserved Domains (1) summary
    cd19113
    Location:2 → 311
    AKR_AKR2B1-10; AKR2B family of aldo-keto reductase (AKR)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P31867.1

Gene LinkOut

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Molecular Biology Databases
Research Materials