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BEST1 bestrophin 1 [ Canis lupus familiaris (dog) ]

Gene ID: 483791, updated on 6-May-2024

Summary

Official Symbol
BEST1provided by VGNC
Official Full Name
bestrophin 1provided by VGNC
Primary source
VGNC:VGNC:38434
See related
Ensembl:ENSCAFG00845010439
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
VMD2
Orthologs
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Genomic context

See BEST1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (55522441..55534952, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (53051324..53062626, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (55071126..55082395, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (54584036..54595144, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (54205089..54216350, complement)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119864142 Neighboring gene ferritin heavy chain 1 Neighboring gene uncharacterized LOC119864284 Neighboring gene RAB3A interacting protein like 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097545.1NP_001091014.1  bestrophin-1

    See identical proteins and their annotated locations for NP_001091014.1

    Status: PROVISIONAL

    Source sequence(s)
    EF110978
    UniProtKB/TrEMBL
    A0A8C0MI06, A0A8C0TD74, A5H7G8, F1Q123
    Related
    ENSCAFP00845014629.1, ENSCAFT00845018737.1
    Conserved Domains (1) summary
    pfam01062
    Location:9316
    Bestrophin; RFP-TM, chloride channel

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    55522441..55534952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038423472.1XP_038279400.1  bestrophin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MI06, A0A8C0TD74, A5H7G8, F1Q123
    Conserved Domains (1) summary
    pfam01062
    Location:9316
    Bestrophin; RFP-TM, chloride channel
  2. XM_038423471.1XP_038279399.1  bestrophin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MI06, A0A8C0TD74, A5H7G8, F1Q123
    Conserved Domains (1) summary
    pfam01062
    Location:9316
    Bestrophin; RFP-TM, chloride channel
  3. XM_038423473.1XP_038279401.1  bestrophin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KL75
    Conserved Domains (1) summary
    pfam01062
    Location:25265
    Bestrophin; RFP-TM, chloride channel

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    54584036..54595144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    54205089..54216350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    55071126..55082395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    53051324..53062626 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)