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PTPRN2 protein tyrosine phosphatase receptor type N2 [ Canis lupus familiaris (dog) ]

Gene ID: 482825, updated on 5-Mar-2024

Summary

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Official Symbol
PTPRN2provided by VGNC
Official Full Name
protein tyrosine phosphatase receptor type N2provided by VGNC
Primary source
VGNC:VGNC:45194
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 16 NC_051820.1 (21636514..22361137, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 16 NC_006598.4 (20472150..21134670, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 16 NC_049237.1 (20639115..21366802, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 16 NC_049276.1 (20003354..20728392, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 16 NC_049757.1 (20586565..21312677, complement)

Chromosome 16 - NC_051820.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene DnaJ heat shock protein family (Hsp40) member B6 Neighboring gene vesicle-associated membrane protein 5-like Neighboring gene microRNA mir-153 Neighboring gene ER membrane protein complex subunit 2-like Neighboring gene uncharacterized LOC119874643 Neighboring gene uncharacterized LOC119869615 Neighboring gene non-SMC condensin II complex subunit G2 Neighboring gene extended synaptotagmin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in secretory granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase N2; LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase N2
XP_038308129.1
XP_038353344.1
XP_038415770.1
XP_038415771.1
XP_038479784.1
XP_038479785.1
XP_038545550.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051820.1 Reference ROS_Cfam_1.0

    Range
    21636514..22361137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038689622.1 → XP_038545550.1  LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase N2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PMW0
    Conserved Domains (3) summary
    cd14610
    Location:699 → 981
    R-PTP-N2; PTP-like domain of receptor-type tyrosine-protein phosphatase N2
    pfam11548
    Location:481 → 569
    Receptor_IA-2; Protein-tyrosine phosphatase receptor IA-2
    pfam14948
    Location:51 → 109
    RESP18; RESP18 domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049276.1 Alternate UMICH_Zoey_3.1

    Range
    20003354..20728392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038497416.1 → XP_038353344.1  LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase N2 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049757.1 Alternate UNSW_CanFamBas_1.0

    Range
    20586565..21312677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038623856.1 → XP_038479784.1  receptor-type tyrosine-protein phosphatase N2 isoform X1

  2. XM_038623857.1 → XP_038479785.1  receptor-type tyrosine-protein phosphatase N2 isoform X2

    Conserved Domains (3) summary
    cd14610
    Location:661 → 943
    R-PTP-N2; PTP-like domain of receptor-type tyrosine-protein phosphatase N2
    pfam11548
    Location:443 → 531
    Receptor_IA-2; Protein-tyrosine phosphatase receptor IA-2
    pfam14948
    Location:12 → 70
    RESP18; RESP18 domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049237.1 Alternate UU_Cfam_GSD_1.0

    Range
    20639115..21366802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038559842.1 → XP_038415770.1  receptor-type tyrosine-protein phosphatase N2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0PMW0

  2. XM_038559843.1 → XP_038415771.1  receptor-type tyrosine-protein phosphatase N2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0PKB2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006598.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    20472150..21134670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038452201.1 → XP_038308129.1  receptor-type tyrosine-protein phosphatase N2 isoform X4

    Conserved Domains (2) summary
    cd14610
    Location:408 → 690
    R-PTP-N2; PTP-like domain of receptor-type tyrosine-protein phosphatase N2
    pfam11548
    Location:200 → 278
    Receptor_IA-2; Protein-tyrosine phosphatase receptor IA-2
Nucleotide Protein
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