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MYF5 myogenic factor 5 [ Canis lupus familiaris (dog) ]

Gene ID: 482582, updated on 5-Mar-2024

Summary

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Official Symbol
MYF5provided by VGNC
Official Full Name
myogenic factor 5provided by VGNC
Primary source
VGNC:VGNC:43533
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (23410137..23412529)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (23473030..23475426)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (23287307..23290205)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (22987463..22989855)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (23046938..23049333)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type Q Neighboring gene uncharacterized LOC102156585 Neighboring gene myogenic factor 6 Neighboring gene lin-7 homolog A, crumbs cell polarity complex component Neighboring gene uncharacterized LOC119869337 Neighboring gene acyl-CoA synthetase short chain family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification and analysis of basic helix-loop-helix domains in dog, Canis lupus familiaris. Wang XH, et al. Mol Genet Genomics, 2015 Apr. PMID 25403511

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of myoblast differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myogenic factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    23410137..23412529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038688123.1 → XP_038544051.1  myogenic factor 5

    UniProtKB/TrEMBL
    A0A8C0KTU0, A0A8C0P3A7
    Conserved Domains (3) summary
    smart00520
    Location:1 → 88
    BASIC; Basic domain in HLH proteins of MYOD family
    cd18937
    Location:83 → 145
    bHLH_TS_Myf5; basic helix-loop-helix (bHLH) domain found in myogenic factor 5 (Myf-5) and similar proteins
    pfam12232
    Location:152 → 214
    Myf5; Myogenic determination factor 5

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    22987463..22989855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038496137.1 → XP_038352065.1  myogenic factor 5

    Conserved Domains (3) summary
    smart00520
    Location:1 → 88
    BASIC; Basic domain in HLH proteins of MYOD family
    cd18937
    Location:83 → 145
    bHLH_TS_Myf5; basic helix-loop-helix (bHLH) domain found in myogenic factor 5 (Myf-5) and similar proteins
    pfam12232
    Location:152 → 214
    Myf5; Myogenic determination factor 5

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    23046938..23049333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038622429.1 → XP_038478357.1  myogenic factor 5

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    23287307..23290205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038558535.1 → XP_038414463.1  myogenic factor 5

    UniProtKB/TrEMBL
    A0A8C0KTU0, A0A8C0P3A7
    Conserved Domains (3) summary
    smart00520
    Location:1 → 88
    BASIC; Basic domain in HLH proteins of MYOD family
    cd18937
    Location:83 → 145
    bHLH_TS_Myf5; basic helix-loop-helix (bHLH) domain found in myogenic factor 5 (Myf-5) and similar proteins
    pfam12232
    Location:152 → 214
    Myf5; Myogenic determination factor 5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    23473030..23475426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847069.4 → XP_852162.1  myogenic factor 5

    UniProtKB/TrEMBL
    A0A8C0KTU0, A0A8C0P3A7
    Conserved Domains (3) summary
    smart00520
    Location:1 → 88
    BASIC; Basic domain in HLH proteins of MYOD family
    cd18937
    Location:83 → 145
    bHLH_TS_Myf5; basic helix-loop-helix (bHLH) domain found in myogenic factor 5 (Myf-5) and similar proteins
    pfam12232
    Location:152 → 214
    Myf5; Myogenic determination factor 5
Nucleotide Protein
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