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SZT2 SZT2 subunit of KICSTOR complex [ Canis lupus familiaris (dog) ]

Gene ID: 482532, updated on 5-Mar-2024

Summary

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Official Symbol
SZT2provided by VGNC
Official Full Name
SZT2 subunit of KICSTOR complexprovided by VGNC
Primary source
VGNC:VGNC:47057
See related
Ensembl:ENSCAFG00845017831
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
73
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (16895853..16947211, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (16856152..16907502, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (16830906..16882264, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (16688557..16739725, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (16757341..16808681, complement)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene receptor-type tyrosine-protein phosphatase F-like Neighboring gene uncharacterized LOC106559759 Neighboring gene hydroxypyruvate isomerase (putative) Neighboring gene mediator complex subunit 8 Neighboring gene ELOVL fatty acid elongase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
KICSTOR complex protein SZT2
Names
SZT2 subunit KICSTOR complex
SZT2, KICSTOR complex subunit
seizure threshold 2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    16895853..16947211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038687976.1 → XP_038543904.1  KICSTOR complex protein SZT2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QNR9, A0A8C0RIG0

  2. XM_038687974.1 → XP_038543902.1  KICSTOR complex protein SZT2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QNR9, A0A8C0RIG0, A0A8I3P364, A0A8P0SW11
    Related
    ENSCAFP00845024826.1, ENSCAFT00845031717.1

  3. XM_038687977.1 → XP_038543905.1  KICSTOR complex protein SZT2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QNR9

RNA

  1. XR_005438071.1 RNA Sequence

  2. XR_005438072.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    16688557..16739725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038495979.1 → XP_038351907.1  KICSTOR complex protein SZT2 isoform X2

  2. XM_038495978.1 → XP_038351906.1  KICSTOR complex protein SZT2 isoform X1

  3. XM_038495980.1 → XP_038351908.1  KICSTOR complex protein SZT2 isoform X3

RNA

  1. XR_005336535.1 RNA Sequence

  2. XR_005336536.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    16757341..16808681 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038622257.1 → XP_038478185.1  KICSTOR complex protein SZT2 isoform X2

  2. XM_038622256.1 → XP_038478184.1  KICSTOR complex protein SZT2 isoform X1

  3. XM_038622258.1 → XP_038478186.1  KICSTOR complex protein SZT2 isoform X3

RNA

  1. XR_005404539.1 RNA Sequence

  2. XR_005404540.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    16830906..16882264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038558367.1 → XP_038414295.1  KICSTOR complex protein SZT2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QNR9, A0A8C0RIG0

  2. XM_038558366.1 → XP_038414294.1  KICSTOR complex protein SZT2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QNR9, A0A8C0RIG0, A0A8I3P364, A0A8P0SW11

  3. XM_038558368.1 → XP_038414296.1  KICSTOR complex protein SZT2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QNR9

RNA

  1. XR_005370317.1 RNA Sequence

  2. XR_005370318.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    16856152..16907502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014119464.3 → XP_013974939.1  KICSTOR complex protein SZT2 isoform X2

    UniProtKB/TrEMBL
    A0A8C0QNR9, A0A8C0RIG0

  2. XM_005629119.4 → XP_005629176.1  KICSTOR complex protein SZT2 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QNR9, A0A8C0RIG0, A0A8I3P364, A0A8P0SW11

  3. XM_014119466.3 → XP_013974941.1  KICSTOR complex protein SZT2 isoform X3

    UniProtKB/TrEMBL
    A0A8C0QNR9

RNA

  1. XR_002633457.2 RNA Sequence

  2. XR_002633458.2 RNA Sequence

Nucleotide Protein
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