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BEST4 bestrophin 4 [ Canis lupus familiaris (dog) ]

Gene ID: 482521, updated on 5-Mar-2024

Summary

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Official Symbol
BEST4provided by VGNC
Official Full Name
bestrophin 4provided by VGNC
Primary source
VGNC:VGNC:38437
See related
Ensembl:ENSCAFG00845026301
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human all
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Genomic context

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Location:
chromosome: 15
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (15690376..15694718)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (15655025..15659367)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (15627893..15632234)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (15487545..15491887)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (15554843..15559185)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene BTB domain containing 19 Neighboring gene dynein light chain Tctex-type 4 Neighboring gene polo like kinase 3 Neighboring gene small nucleolar RNA SNORD38 Neighboring gene small nucleolar RNA SNORD38 Neighboring gene ribosomal protein S8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bestrophin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    15690376..15694718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038687239.1 → XP_038543167.1  bestrophin-4

    UniProtKB/TrEMBL
    A0A8C0KUB5, A0A8C0Z2K5, A0A8I3PSM5
    Related
    ENSCAFP00845036419.1, ENSCAFT00845046377.1
    Conserved Domains (1) summary
    pfam01062
    Location:8 → 331
    Bestrophin; RFP-TM, chloride channel

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    15487545..15491887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038496815.1 → XP_038352743.1  bestrophin-4

    Conserved Domains (1) summary
    pfam01062
    Location:8 → 331
    Bestrophin; RFP-TM, chloride channel

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    15554843..15559185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621483.1 → XP_038477411.1  bestrophin-4

    Conserved Domains (1) summary
    pfam01062
    Location:8 → 331
    Bestrophin; RFP-TM, chloride channel

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    15627893..15632234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557580.1 → XP_038413508.1  bestrophin-4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    15655025..15659367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038451829.1 → XP_038307757.1  bestrophin-4

    UniProtKB/TrEMBL
    A0A8C0KUB5, A0A8C0Z2K5, A0A8I3PSM5
    Conserved Domains (1) summary
    pfam01062
    Location:8 → 331
    Bestrophin; RFP-TM, chloride channel
Nucleotide Protein
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