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COL12A1 collagen type XII alpha 1 chain [ Canis lupus familiaris (dog) ]

Gene ID: 481881, updated on 17-Aug-2022

Summary

Official Symbol
COL12A1provided by VGNC
Official Full Name
collagen type XII alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:39458
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See COL12A1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
66
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (37264259..37387691, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (36591487..36714157, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (36947167..37063520, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (36828942..36945160, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (36819169..36935951, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 12 NC_006594.3 (36720686..36838321, complement)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 124-like Neighboring gene splicing factor 3A subunit 3-like Neighboring gene U1 spliceosomal RNA Neighboring gene protein transport protein Sec61 subunit gamma-like

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
collagen alpha-1(XII) chain; LOW QUALITY PROTEIN: collagen alpha-1(XII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    37264259..37387691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038683972.1XP_038539900.1  LOW QUALITY PROTEIN: collagen alpha-1(XII) chain isoform X1

    Conserved Domains (6) summary
    smart00060
    Location:14751548
    FN3; Fibronectin type 3 domain
    smart00210
    Location:25232715
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:724805
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:11981362
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:17591837
    fn3; Fibronectin type III domain
    pfam01391
    Location:28722900
    Collagen; Collagen triple helix repeat (20 copies)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    36828942..36945160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038492253.1XP_038348181.1  LOW QUALITY PROTEIN: collagen alpha-1(XII) chain isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    36819169..36935951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038618401.1XP_038474329.1  collagen alpha-1(XII) chain isoform X3

  2. XM_038618402.1XP_038474330.1  collagen alpha-1(XII) chain isoform X4

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    36947167..37063520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038554541.1XP_038410469.1  collagen alpha-1(XII) chain isoform X5

  2. XM_038554542.1XP_038410470.1  collagen alpha-1(XII) chain isoform X6

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    36591487..36714157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005627534.3XP_005627591.1  collagen alpha-1(XII) chain isoform X7

    UniProtKB/TrEMBL
    A0A5F4BY69
    Conserved Domains (6) summary
    pfam01391
    Location:27672893
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:14741547
    FN3; Fibronectin type 3 domain
    smart00210
    Location:25222714
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:724805
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:11981361
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:17561836
    fn3; Fibronectin type III domain
  2. XM_539002.6XP_539002.2  collagen alpha-1(XII) chain isoform X8

    UniProtKB/TrEMBL
    F6XWS5, J9P6G0
    Conserved Domains (6) summary
    pfam01391
    Location:27672893
    Collagen; Collagen triple helix repeat (20 copies)
    smart00060
    Location:14741547
    FN3; Fibronectin type 3 domain
    smart00210
    Location:25222714
    TSPN; Thrombospondin N-terminal -like domains
    cd00063
    Location:724805
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd01482
    Location:11981361
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:17561836
    fn3; Fibronectin type III domain