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LOC4815574 protein will die slowly [ Drosophila pseudoobscura ]

Gene ID: 4815574, updated on 25-Jan-2024

Summary

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Gene symbol
LOC4815574
Gene description
protein will die slowly
See related
EnsemblRapid:LOC4815574
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
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Genomic context

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See LOC4815574 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) X NC_046683.1 (3773293..3775291, complement)

Chromosome X - NC_046683.1Genomic Context describing neighboring genes Neighboring gene probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial Neighboring gene pyruvate dehydrogenase E1 component subunit alpha, mitochondrial Neighboring gene NCK-interacting protein with SH3 domain Neighboring gene dihydropyrimidine dehydrogenase [NADP(+)] Neighboring gene uncharacterized LOC4815875

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046683.1 Chromosome X Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein will die slowly

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046683.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    3773293..3775291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001355600.4 → XP_001355636.1  protein will die slowly

    See identical proteins and their annotated locations for XP_001355636.1

    UniProtKB/TrEMBL
    A0A6I8UHN0, Q29IF8
    Related
    XP_001355636.1, XM_001355600.4
    Conserved Domains (2) summary
    cd00200
    Location:59 → 353
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:70 → 107
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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