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LOC4801764 eukaryotic translation initiation factor 4E type 2 [ Drosophila pseudoobscura ]

Gene ID: 4801764, updated on 14-Dec-2023

Summary

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Gene symbol
LOC4801764
Gene description
eukaryotic translation initiation factor 4E type 2
See related
EnsemblRapid:LOC4801764
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
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Genomic context

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See LOC4801764 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 2 NC_046679.1 (14784567..14835704, complement)

Chromosome 2 - NC_046679.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117183266 Neighboring gene structural maintenance of chromosomes protein 1A Neighboring gene syntaxin-1A Neighboring gene UV excision repair protein RAD23 homolog B Neighboring gene ADP-ribosylation factor-like protein 6-interacting protein 4 Neighboring gene uncharacterized LOC4801769 Neighboring gene uncharacterized LOC4801770

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046679.1 Chromosome 2 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Distribution of eIF4E-Family Members across Insecta. Tettweiler G, et al. Comp Funct Genomics, 2012. PMID 22745595, Free PMC Article
  2. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  3. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA 7-methylguanosine cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 4F complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 4E type 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046679.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    14784567..14835704 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001358769.5 → XP_001358806.4  eukaryotic translation initiation factor 4E type 2 isoform X2

    UniProtKB/TrEMBL
    A0A6I8UPQ3
    Related
    XP_001358806.4, XM_001358769.5
    Conserved Domains (1) summary
    pfam01652
    Location:48 → 203
    IF4E; Eukaryotic initiation factor 4E

  2. XM_015181901.2 → XP_015037387.1  eukaryotic translation initiation factor 4E type 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8VBU4
    Related
    XP_015037387.1, XM_015181901.2
    Conserved Domains (1) summary
    pfam01652
    Location:48 → 204
    IF4E; Eukaryotic initiation factor 4E

  3. XM_033376591.1 → XP_033232482.1  eukaryotic translation initiation factor 4E type 2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8VBU4
    Related
    XP_033232482.1, XM_033376591.1
    Conserved Domains (1) summary
    pfam01652
    Location:48 → 204
    IF4E; Eukaryotic initiation factor 4E

  4. XM_033376592.1 → XP_033232483.1  eukaryotic translation initiation factor 4E type 2 isoform X3

    UniProtKB/TrEMBL
    A0A6I8VNN8
    Related
    XP_033232483.1, XM_033376592.1
    Conserved Domains (1) summary
    pfam01652
    Location:48 → 164
    IF4E; Eukaryotic initiation factor 4E
Nucleotide Protein Strain
Heading Accession and Version

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