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LOC4800345 probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial [ Drosophila pseudoobscura ]

Gene ID: 4800345, updated on 14-Dec-2023

Summary

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Gene symbol
LOC4800345
Gene description
probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial
See related
EnsemblRapid:LOC4800345
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
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Genomic context

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See LOC4800345 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 2 NC_046679.1 (1682335..1689324)

Chromosome 2 - NC_046679.1Genomic Context describing neighboring genes Neighboring gene guanylate cyclase soluble subunit beta-1 Neighboring gene uncharacterized LOC4800341 Neighboring gene protein mesh Neighboring gene protein bottleneck Neighboring gene chaoptin Neighboring gene protein zwilch

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046679.1 Chromosome 2 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046679.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    1682335..1689324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001357531.4 → XP_001357568.4  probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial

    UniProtKB/TrEMBL
    A0A6I8UM11
    Related
    XP_001357568.4, XM_001357531.4
    Conserved Domains (1) summary
    cl39092
    Location:40 → 931
    SucA; 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Nucleotide Protein Strain
Heading Accession and Version

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