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ABAT 4-aminobutyrate aminotransferase [ Canis lupus familiaris (dog) ]

Gene ID: 479856, updated on 12-Jan-2021

Summary

Official Symbol
ABATprovided by VGNC
Official Full Name
4-aminobutyrate aminotransferaseprovided by VGNC
Primary source
VGNC:VGNC:37421
See related
Ensembl:ENSCAFG00000019030
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See ABAT in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (33584479..33670069, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (34776452..34862027, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (33678493..33764059, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (33386823..33472421, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (33256654..33342147, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 6 NC_006588.3 (33385779..33471348, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene phosphomannomutase 2 Neighboring gene transmembrane protein 186 Neighboring gene zinc finger protein 106-like Neighboring gene methyltransferase like 22 Neighboring gene uncharacterized LOC119872336 Neighboring gene transmembrane protein 114

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
4-aminobutyrate aminotransferase, mitochondrial
XP_005621619.1
XP_022275790.1
XP_038335112.1
XP_038335113.1
XP_038335114.1
XP_038396337.1
XP_038396338.1
XP_038396339.1
XP_038460438.1
XP_038460439.1
XP_038460440.1
XP_038525124.1
XP_038525125.1
XP_038525126.1
XP_851424.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    33584479..33670069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038669196.1XP_038525124.1  4-aminobutyrate aminotransferase, mitochondrial

  2. XM_038669198.1XP_038525126.1  4-aminobutyrate aminotransferase, mitochondrial

  3. XM_038669197.1XP_038525125.1  4-aminobutyrate aminotransferase, mitochondrial

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    33386823..33472421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479184.1XP_038335112.1  4-aminobutyrate aminotransferase, mitochondrial

  2. XM_038479186.1XP_038335114.1  4-aminobutyrate aminotransferase, mitochondrial

  3. XM_038479185.1XP_038335113.1  4-aminobutyrate aminotransferase, mitochondrial

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    33256654..33342147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604510.1XP_038460438.1  4-aminobutyrate aminotransferase, mitochondrial

  2. XM_038604512.1XP_038460440.1  4-aminobutyrate aminotransferase, mitochondrial

  3. XM_038604511.1XP_038460439.1  4-aminobutyrate aminotransferase, mitochondrial

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    33678493..33764059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540409.1XP_038396337.1  4-aminobutyrate aminotransferase, mitochondrial

  2. XM_038540411.1XP_038396339.1  4-aminobutyrate aminotransferase, mitochondrial

  3. XM_038540410.1XP_038396338.1  4-aminobutyrate aminotransferase, mitochondrial

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    34776452..34862027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_846331.6XP_851424.2  4-aminobutyrate aminotransferase, mitochondrial

    See identical proteins and their annotated locations for XP_851424.2

    UniProtKB/TrEMBL
    E2R776
    Related
    ENSCAFP00000028090.4
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  2. XM_005621562.4XP_005621619.1  4-aminobutyrate aminotransferase, mitochondrial

    See identical proteins and their annotated locations for XP_005621619.1

    UniProtKB/TrEMBL
    E2R776
    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
  3. XM_022420082.2XP_022275790.1  4-aminobutyrate aminotransferase, mitochondrial

    Conserved Domains (1) summary
    TIGR00699
    Location:34496
    GABAtrns_euk; 4-aminobutyrate aminotransferase, eukaryotic type
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