OXCT1 3-oxoacid CoA-transferase 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: OXCT1provided by VGNC
Official Full Name: 3-oxoacid CoA-transferase 1provided by VGNC
Primary source: VGNC:VGNC:51916
See related: Ensembl:ENSCAFG00845002156
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	4	NC_051808.1 (68221131..68355789)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	4	NC_006586.4 (67392579..67524955)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	4	NC_049225.1 (68633289..68767738)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	4	NC_049264.1 (67962898..68117238)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	4	NC_049745.1 (68093650..68227696)
105	previous assembly	CanFam3.1 (GCF_000002285.3)	4	NC_006586.3 (67709846..67841737)

Chromosome 4 - NC_051808.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

Orthologs from Annotation Pipeline: 503 organisms have orthologs with human gene OXCT1
Orthologs

General protein information

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Preferred Names: succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial

XP_038330032.1

EC 2.8.3.5

XP_038355024.1

EC 2.8.3.5

XP_038391140.1

EC 2.8.3.5

XP_038455430.1

EC 2.8.3.5

XP_038519747.1

EC 2.8.3.5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051808.1 Reference ROS_Cfam_1.0

Range

68221131..68355789

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038663819.1 → XP_038519747.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

UniProtKB/TrEMBL

A0A8C0KF00, A0A8C0M6C9, A0A8P0T476

Related

ENSCAFP00845003043.1, ENSCAFT00845003821.1

Conserved Domains (2) summary

COG1788
Location:41 → 274

AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]

cl00339
Location:300 → 508

SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

Alternate UMICH_Zoey_3.1

Genomic

NC_049264.1 Alternate UMICH_Zoey_3.1

Range

67962898..68117238

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038474104.1 → XP_038330032.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X2

Conserved Domains (2) summary

COG1788
Location:41 → 274

AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]

cl00339
Location:300 → 508

SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049745.1 Alternate UNSW_CanFamBas_1.0

Range

68093650..68227696

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038599502.1 → XP_038455430.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

Conserved Domains (2) summary

COG1788
Location:41 → 274

AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]

cl00339
Location:300 → 508

SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049225.1 Alternate UU_Cfam_GSD_1.0

Range

68633289..68767738

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038535212.1 → XP_038391140.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

Conserved Domains (2) summary

COG1788
Location:41 → 274

AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]

cl00339
Location:300 → 508

SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

67392579..67524955

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038499096.1 → XP_038355024.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial isoform X1

UniProtKB/TrEMBL

A0A8C0KF00, A0A8C0M6C9, A0A8P0T476

Conserved Domains (2) summary

COG1788
Location:41 → 274

AtoD; Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid transport and metabolism]

cl00339
Location:300 → 508

SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...