U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TARBP1 tRNA guanosine 2 -O-methyltransferase TARBP1 [ Canis lupus familiaris (dog) ]

Gene ID: 479200, updated on 25-Jul-2026
Gene symbol
TARBP1
Gene description
tRNA guanosine 2 -O-methyltransferase TARBP1
See related
Ensembl:ENSCAFG00845003609 RGD:12388217
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See TARBP1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
32
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (5378412..5460313)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (5340416..5422209)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (5731385..5813233)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (5391058..5472906)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (5507169..5590191)

Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095434 Neighboring gene uncharacterized LOC106558664 Neighboring gene uncharacterized LOC102155552 Neighboring gene cytochrome c oxidase assembly factor 6

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
probable methyltransferase TARBP1
Names
TAR (HIV-1) RNA binding protein 1
XP_013968185.2
XP_038328791.1
XP_038328792.1
XP_038328793.1
XP_038328794.1
XP_038343650.1
XP_038343669.1
XP_038343677.1
XP_038389804.1
XP_038389805.1
XP_038389806.1
XP_038389807.1
XP_038454126.1

Length

  • 1611
XP_038518428.1
XP_038518429.1
XP_038518430.1
XP_038518431.1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051808.1 Reference ROS_Cfam_1.0

    Range
    5378412..5460313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038662500.1 → XP_038518428.1  probable methyltransferase TARBP1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Related
    ENSCAFP00845005160.1, ENSCAFT00845006486.1
    Conserved Domains (1) summary
    cd18091
    Location:1454 → 1598
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  2. XM_038662501.1 → XP_038518429.1  probable methyltransferase TARBP1 isoform X1

    UniProtKB/TrEMBL
    A0A8I3MPS6
    Related
    ENSCAFP00845005207.1, ENSCAFT00845006544.1
    Conserved Domains (1) summary
    cd18091
    Location:1404 → 1548
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  3. XM_038662502.1 → XP_038518430.1  probable methyltransferase TARBP1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1147 → 1291
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  4. XM_038662503.1 → XP_038518431.1  probable methyltransferase TARBP1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1146 → 1290
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

RNA

  1. XR_005425363.1 RNA Sequence

  2. XR_005425362.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049264.1 Alternate UMICH_Zoey_3.1

    Range
    5391058..5472906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038472863.1 → XP_038328791.1  

    Conserved Domains (1) summary
    cd18091
    Location:1456 → 1600
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  2. XM_038472864.1 → XP_038328792.1  

    Conserved Domains (1) summary
    cd18091
    Location:1406 → 1550
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  3. XM_038472865.1 → XP_038328793.1  

    Conserved Domains (1) summary
    cd18091
    Location:1147 → 1291
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  4. XM_038472866.1 → XP_038328794.1  

    Conserved Domains (1) summary
    cd18091
    Location:1146 → 1290
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

RNA

  1. XR_005323948.1 RNA Sequence

  2. XR_005323947.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

    Range
    5507169..5590191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038598198.1 → XP_038454126.1  

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

    Range
    5731385..5813233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038533876.1 → XP_038389804.1  probable methyltransferase TARBP1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1456 → 1600
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  2. XM_038533877.1 → XP_038389805.1  probable methyltransferase TARBP1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1406 → 1550
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  3. XM_038533878.1 → XP_038389806.1  probable methyltransferase TARBP1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1147 → 1291
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  4. XM_038533879.1 → XP_038389807.1  probable methyltransferase TARBP1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1146 → 1290
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

RNA

  1. XR_005357770.1 RNA Sequence

  2. XR_005357769.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    5340416..5422209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014112710.2 → XP_013968185.2  probable methyltransferase TARBP1 isoform X4

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1458 → 1602
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  2. XM_038487722.1 → XP_038343650.1  probable methyltransferase TARBP1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1408 → 1552
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  3. XM_038487741.1 → XP_038343669.1  probable methyltransferase TARBP1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1147 → 1291
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

  4. XM_038487749.1 → XP_038343677.1  probable methyltransferase TARBP1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0LRP9
    Conserved Domains (1) summary
    cd18091
    Location:1146 → 1290
    SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

RNA

  1. XR_005331571.1 RNA Sequence

  2. XR_005331570.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials