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APOD apolipoprotein D [ Canis lupus familiaris (dog) ]

Gene ID: 478604, updated on 17-Aug-2024

Summary

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Official Symbol
APODprovided by VGNC
Official Full Name
apolipoprotein Dprovided by VGNC
Primary source
VGNC:VGNC:38001
See related
Ensembl:ENSCAFG00845030677
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See APOD in Genome Data Viewer
Location:
chromosome: 33
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 33 NC_051837.1 (30739971..30756943)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 33 NC_006615.4 (30513383..30531252)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 33 NC_049254.1 (31191636..31209901)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 33 NC_049293.1 (30534404..30551475)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 33 NC_049774.1 (30570143..30588341)

Chromosome 33 - NC_051837.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111093746 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene 3-hydroxybutyrate dehydrogenase 1 Neighboring gene uncharacterized LOC106558182 Neighboring gene POU domain, class 5, transcription factor 1-like Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 Neighboring gene ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tissue regeneration IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein D; LOW QUALITY PROTEIN: apolipoprotein D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051837.1 Reference ROS_Cfam_1.0

    Range
    30739971..30756943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038445338.1 → XP_038301266.1  apolipoprotein D isoform X1

    UniProtKB/TrEMBL
    A0A8C0JNN1, A0A8C0PAS7, A0A8I3Q4W1, A0A8I3S7R2, A0A8P0SHY2, A0A8P0SID9
    Related
    ENSCAFP00845042815.1, ENSCAFT00845054471.1
    Conserved Domains (1) summary
    cd19437
    Location:41 → 198
    lipocalin_apoD-like; apolipoprotein D and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049293.1 Alternate UMICH_Zoey_3.1

    Range
    30534404..30551475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519580.1 → XP_038375508.1  LOW QUALITY PROTEIN: apolipoprotein D isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049774.1 Alternate UNSW_CanFamBas_1.0

    Range
    30570143..30588341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038647631.1 → XP_038503559.1  apolipoprotein D isoform X1

    Conserved Domains (1) summary
    cd19437
    Location:41 → 198
    lipocalin_apoD-like; apolipoprotein D and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049254.1 Alternate UU_Cfam_GSD_1.0

    Range
    31191636..31209901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038583223.1 → XP_038439151.1  apolipoprotein D isoform X1

    UniProtKB/TrEMBL
    A0A8C0JNN1, A0A8C0PAS7, A0A8I3Q4W1, A0A8I3S7R2, A0A8P0SHY2, A0A8P0SID9
    Conserved Domains (1) summary
    cd19437
    Location:41 → 198
    lipocalin_apoD-like; apolipoprotein D and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006615.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    30513383..30531252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014110289.2 → XP_013965764.1  apolipoprotein D isoform X1

    UniProtKB/TrEMBL
    A0A8C0JNN1, A0A8C0PAS7, A0A8I3Q4W1, A0A8I3S7R2, A0A8P0SHY2, A0A8P0SID9
    Conserved Domains (1) summary
    cd19437
    Location:41 → 198
    lipocalin_apoD-like; apolipoprotein D and similar proteins
Nucleotide Protein
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