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LIN54 lin-54 DREAM MuvB core complex component [ Canis lupus familiaris (dog) ]

Gene ID: 478454, updated on 25-Jul-2026
Official Symbol
LIN54provided by VGNC
Official Full Name
lin-54 DREAM MuvB core complex componentprovided by VGNC
Primary source
VGNC:VGNC:42685
See related
Ensembl:ENSCAFG00845020955 RGD:12422362
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See LIN54 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 32 NC_051836.1 (6896796..6962825, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 32 NC_006614.4 (34943820..35009627)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 32 NC_049253.1 (33063699..33129725)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 32 NC_049292.1 (6967885..7033859, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 32 NC_049773.1 (6836618..6902413, complement)

Chromosome 32 - NC_051836.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene uncharacterized LOC102154096 Neighboring gene THAP domain containing 9 Neighboring gene COP9 signalosome subunit 4 Neighboring gene synaptobrevin-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein lin-54 homolog
Names
lin-54 homolog

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051836.1 Reference ROS_Cfam_1.0

    Range
    6896796..6962825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443995.1 → XP_038299923.1  protein lin-54 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0QYZ2, A0A8I3S239
    Related
    ENSCAFP00845028974.1, ENSCAFT00845037004.1
    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_038443998.1 → XP_038299926.1  protein lin-54 homolog isoform X4

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038443994.1 → XP_038299922.1  protein lin-54 homolog isoform X1

    Conserved Domains (2) summary
    pfam03154
    Location:229 → 479
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:614 → 649
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  4. XM_038443997.1 → XP_038299925.1  protein lin-54 homolog isoform X3

    Conserved Domains (2) summary
    pfam05109
    Location:7 → 232
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam03638
    Location:393 → 428
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  5. XM_038443996.1 → XP_038299924.1  protein lin-54 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0QYZ2, A0A8I3S239
    Related
    ENSCAFP00845029047.1, ENSCAFT00845037089.1
    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  6. XM_038443999.1 → XP_038299927.1  protein lin-54 homolog isoform X4

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049292.1 Alternate UMICH_Zoey_3.1

    Range
    6967885..7033859 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038518396.1 → XP_038374324.1  

    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_038518399.1 → XP_038374327.1  

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038518395.1 → XP_038374323.1  

    Conserved Domains (2) summary
    pfam03154
    Location:229 → 479
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:614 → 649
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  4. XM_038518398.1 → XP_038374326.1  

    Conserved Domains (2) summary
    pfam05109
    Location:7 → 232
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam03638
    Location:393 → 428
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  5. XM_038518397.1 → XP_038374325.1  

    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  6. XM_038518400.1 → XP_038374328.1  

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049773.1 Alternate UNSW_CanFamBas_1.0

    Range
    6836618..6902413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038646325.1 → XP_038502253.1  

    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_038646328.1 → XP_038502256.1  

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038646324.1 → XP_038502252.1  

    Conserved Domains (2) summary
    pfam03154
    Location:229 → 479
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:614 → 649
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  4. XM_038646327.1 → XP_038502255.1  

    Conserved Domains (2) summary
    pfam05109
    Location:7 → 232
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam03638
    Location:393 → 428
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  5. XM_038646326.1 → XP_038502254.1  

    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  6. XM_038646329.1 → XP_038502257.1  

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049253.1 Alternate UU_Cfam_GSD_1.0

    Range
    33063699..33129725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038582264.1 → XP_038438192.1  protein lin-54 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0QYZ2, A0A8I3S239
    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_038582267.1 → XP_038438195.1  protein lin-54 homolog isoform X4

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038582263.1 → XP_038438191.1  protein lin-54 homolog isoform X1

    Conserved Domains (2) summary
    pfam03154
    Location:229 → 479
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:614 → 649
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  4. XM_038582266.1 → XP_038438194.1  protein lin-54 homolog isoform X3

    Conserved Domains (2) summary
    pfam05109
    Location:7 → 232
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam03638
    Location:393 → 428
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  5. XM_038582265.1 → XP_038438193.1  protein lin-54 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0QYZ2, A0A8I3S239
    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  6. XM_038582268.1 → XP_038438196.1  protein lin-54 homolog isoform X4

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006614.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    34943820..35009627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038462133.1 → XP_038318061.1  protein lin-54 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8C0QYZ2, A0A8I3S239
    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_038462135.1 → XP_038318063.1  protein lin-54 homolog isoform X4

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_005639130.4 → XP_005639187.1  protein lin-54 homolog isoform X1

    Conserved Domains (2) summary
    pfam03154
    Location:229 → 479
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:614 → 649
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  4. XM_005639131.4 → XP_005639188.1  protein lin-54 homolog isoform X3

    Conserved Domains (2) summary
    pfam05109
    Location:7 → 232
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam03638
    Location:393 → 428
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  5. XM_003640099.5 → XP_003640147.1  protein lin-54 homolog isoform X2

    See identical proteins and their annotated locations for XP_003640147.1

    UniProtKB/TrEMBL
    A0A8C0QYZ2, A0A8I3S239
    Conserved Domains (2) summary
    pfam03154
    Location:211 → 461
    Atrophin-1; Atrophin-1 family
    pfam03638
    Location:596 → 631
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  6. XM_022413508.2 → XP_022269216.1  protein lin-54 homolog isoform X4

    Conserved Domains (2) summary
    pfam03638
    Location:375 → 410
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
    cl41773
    Location:26 → 245
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
Nucleotide Protein
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