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SHROOM3 shroom family member 3 [ Canis lupus familiaris (dog) ]

Gene ID: 478438, updated on 5-Mar-2024

Summary

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Official Symbol
SHROOM3provided by VGNC
Official Full Name
shroom family member 3provided by VGNC
Primary source
VGNC:VGNC:46158
See related
Ensembl:ENSCAFG00845014821
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 32
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 32 NC_051836.1 (1295876..1415834)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 32 NC_006614.4 (40494053..40614343, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 32 NC_049253.1 (38806933..38927333, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 32 NC_049292.1 (1293808..1413353)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 32 NC_049773.1 (1292672..1369119)

Chromosome 32 - NC_051836.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein G-like Neighboring gene ribosomal protein S3A pseudogene Neighboring gene oligosaccharyltransferase complex subunit OSTC-like Neighboring gene 40S ribosomal protein S2-like Neighboring gene farnesyl pyrophosphate synthase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cortical actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Shroom3; LOW QUALITY PROTEIN: protein Shroom3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051836.1 Reference ROS_Cfam_1.0

    Range
    1295876..1415834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443863.1 → XP_038299791.1  protein Shroom3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KEJ3
    Related
    ENSCAFP00845020877.1, ENSCAFT00845026489.1
    Conserved Domains (4) summary
    PHA03247
    Location:634 → 1107
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1286 → 1412
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1602 → 1886
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:810 → 977
    ASD1; Apx/Shroom domain ASD1

  2. XM_038443862.1 → XP_038299790.1  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    A0A8P0SDR3
    Related
    ENSCAFP00845020897.1, ENSCAFT00845026513.1
    Conserved Domains (4) summary
    PHA03247
    Location:690 → 1163
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1342 → 1468
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1658 → 1942
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:866 → 1033
    ASD1; Apx/Shroom domain ASD1

  3. XM_038443864.1 → XP_038299792.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A8P0SDR3
    Conserved Domains (4) summary
    PHA03247
    Location:618 → 1091
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1270 → 1396
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1586 → 1870
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:794 → 961
    ASD1; Apx/Shroom domain ASD1

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049292.1 Alternate UMICH_Zoey_3.1

    Range
    1293808..1413353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038518285.1 → XP_038374213.1  protein Shroom3 isoform X2

    Conserved Domains (4) summary
    PHA03247
    Location:634 → 1107
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1286 → 1412
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1602 → 1886
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:810 → 977
    ASD1; Apx/Shroom domain ASD1

  2. XM_038518286.1 → XP_038374214.1  protein Shroom3 isoform X3

    Conserved Domains (4) summary
    PHA03247
    Location:618 → 1091
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1270 → 1396
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1586 → 1870
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:794 → 961
    ASD1; Apx/Shroom domain ASD1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049773.1 Alternate UNSW_CanFamBas_1.0

    Range
    1292672..1369119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038646209.1 → XP_038502137.1  LOW QUALITY PROTEIN: protein Shroom3 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049253.1 Alternate UU_Cfam_GSD_1.0

    Range
    38806933..38927333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038582384.1 → XP_038438312.1  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    A0A8P0SDR3

  2. XM_038582385.1 → XP_038438313.1  protein Shroom3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KEJ3

  3. XM_038582386.1 → XP_038438314.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A8P0SDR3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006614.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    40494053..40614343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022413456.2 → XP_022269164.2  protein Shroom3 isoform X1

    UniProtKB/TrEMBL
    A0A8P0SDR3
    Conserved Domains (4) summary
    PHA03247
    Location:690 → 1163
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1342 → 1468
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1658 → 1942
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:866 → 1033
    ASD1; Apx/Shroom domain ASD1

  2. XM_038462178.1 → XP_038318106.1  protein Shroom3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KEJ3
    Conserved Domains (4) summary
    PHA03247
    Location:634 → 1107
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1286 → 1412
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1602 → 1886
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:810 → 977
    ASD1; Apx/Shroom domain ASD1

  3. XM_038462179.1 → XP_038318107.1  protein Shroom3 isoform X3

    UniProtKB/TrEMBL
    A0A8P0SDR3
    Conserved Domains (4) summary
    PHA03247
    Location:618 → 1091
    PHA03247; large tegument protein UL36; Provisional
    COG5422
    Location:1270 → 1396
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam08687
    Location:1586 → 1870
    ASD2; Apx/Shroom domain ASD2
    pfam08688
    Location:794 → 961
    ASD1; Apx/Shroom domain ASD1
Nucleotide Protein
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