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ZMAT5 zinc finger matrin-type 5 [ Canis lupus familiaris (dog) ]

Gene ID: 477536, updated on 5-Mar-2024

Summary

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Official Symbol
ZMAT5provided by VGNC
Official Full Name
zinc finger matrin-type 5provided by VGNC
Primary source
VGNC:VGNC:48642
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (23299862..23326695, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (22797335..22824147, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (23332398..23359218, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (23010086..23036902, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (23272639..23299448, complement)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene nipsnap homolog 1 Neighboring gene NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor Neighboring gene calcium binding protein 7 Neighboring gene uncharacterized LOC111092529 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit X Neighboring gene activating signal cointegrator 1 complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger matrin-type protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    23299862..23326695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038437189.1 → XP_038293117.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_038437190.1 → XP_038293118.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_038437193.1 → XP_038293121.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  4. XM_038437191.1 → XP_038293119.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    23010086..23036902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512093.1 → XP_038368021.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_038512094.1 → XP_038368022.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_038512096.1 → XP_038368024.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  4. XM_038512095.1 → XP_038368023.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    23272639..23299448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038639784.1 → XP_038495712.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_038639785.1 → XP_038495713.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_038639787.1 → XP_038495715.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  4. XM_038639786.1 → XP_038495714.1  zinc finger matrin-type protein 5

    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    23332398..23359218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575594.1 → XP_038431522.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_038575595.1 → XP_038431523.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_038575597.1 → XP_038431525.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  4. XM_038575596.1 → XP_038431524.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22797335..22824147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534730.7 → XP_534730.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_022410308.2 → XP_022266016.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_014108059.3 → XP_013963534.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  4. XM_022410309.2 → XP_022266017.1  zinc finger matrin-type protein 5

    UniProtKB/TrEMBL
    A0A8C0JK17, A0A8C0TFG3
    Conserved Domains (2) summary
    cl22907
    Location:5 → 46
    zf-U1; U1 zinc finger
    pfam00642
    Location:55 → 76
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein
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