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U2SURP U2 snRNP associated SURP domain containing [ Canis lupus familiaris (dog) ]

Gene ID: 477103, updated on 25-Jul-2026
Official Symbol
U2SURPprovided by VGNC
Official Full Name
U2 snRNP associated SURP domain containingprovided by VGNC
Primary source
VGNC:VGNC:48033
See related
Ensembl:ENSCAFG00845029146 RGD:12198004
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
all
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Try the new Transcripts and proteins table
See U2SURP in Genome Data Viewer
Location:
chromosome: 23
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (39128392..39179063)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (38522273..38576356)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (39130982..39185239)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (38811868..38862506)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (38892825..38946901)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23a-like Neighboring gene progestin and adipoQ receptor family member 9 Neighboring gene uncharacterized LOC102151264 Neighboring gene carbohydrate sulfotransferase 2 Neighboring gene proline-rich protein 32-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Light-activated BioID - an optically activated proximity labeling system to study protein-protein interactions. Shafraz O, et al. J Cell Sci, 2023 Oct 1. PMID 37756605, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
U2 snRNP-associated SURP motif-containing protein

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    39128392..39179063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038432573.1 → XP_038288501.1  U2 snRNP-associated SURP motif-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0KE87, A0A8I3Q6K4
    Related
    ENSCAFP00845040487.1, ENSCAFT00845051600.1
    Conserved Domains (5) summary
    smart00582
    Location:541 → 676
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 352
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:429 → 480
    Surp; Surp module
    cd12223
    Location:273 → 356
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:836 → 884
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  2. XM_038432574.1 → XP_038288502.1  U2 snRNP-associated SURP motif-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0KE87
    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  3. XM_038432575.1 → XP_038288503.1  U2 snRNP-associated SURP motif-containing protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE87
    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:155 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  4. XM_038432576.1 → XP_038288504.1  U2 snRNP-associated SURP motif-containing protein isoform X4

    Conserved Domains (3) summary
    smart00582
    Location:132 → 267
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam01805
    Location:20 → 71
    Surp; Surp module
    cd21370
    Location:427 → 475
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    38811868..38862506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038507877.1 → XP_038363805.1  

    Conserved Domains (5) summary
    smart00582
    Location:541 → 676
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 352
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:429 → 480
    Surp; Surp module
    cd12223
    Location:273 → 356
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:836 → 884
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  2. XM_038507878.1 → XP_038363806.1  

    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  3. XM_038507879.1 → XP_038363807.1  

    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:155 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  4. XM_038507880.1 → XP_038363808.1  

    Conserved Domains (3) summary
    smart00582
    Location:132 → 267
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam01805
    Location:20 → 71
    Surp; Surp module
    cd21370
    Location:427 → 475
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    38892825..38946901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038635308.1 → XP_038491236.1  

    Conserved Domains (5) summary
    smart00582
    Location:541 → 676
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 352
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:429 → 480
    Surp; Surp module
    cd12223
    Location:273 → 356
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:836 → 884
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  2. XM_038635309.1 → XP_038491237.1  

    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  3. XM_038635310.1 → XP_038491238.1  

    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:155 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  4. XM_038635311.1 → XP_038491239.1  

    Conserved Domains (3) summary
    smart00582
    Location:132 → 267
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam01805
    Location:20 → 71
    Surp; Surp module
    cd21370
    Location:427 → 475
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    39130982..39185239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038571118.1 → XP_038427046.1  U2 snRNP-associated SURP motif-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0KE87, A0A8I3Q6K4
    Conserved Domains (5) summary
    smart00582
    Location:541 → 676
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 352
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:429 → 480
    Surp; Surp module
    cd12223
    Location:273 → 356
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:836 → 884
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  2. XM_038571119.1 → XP_038427047.1  U2 snRNP-associated SURP motif-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0KE87
    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  3. XM_038571120.1 → XP_038427048.1  U2 snRNP-associated SURP motif-containing protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE87
    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:155 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  4. XM_038571121.1 → XP_038427049.1  U2 snRNP-associated SURP motif-containing protein isoform X4

    Conserved Domains (3) summary
    smart00582
    Location:132 → 267
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam01805
    Location:20 → 71
    Surp; Surp module
    cd21370
    Location:427 → 475
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    38522273..38576356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_534297.6 → XP_534297.3  U2 snRNP-associated SURP motif-containing protein isoform X1

    UniProtKB/TrEMBL
    A0A8C0KE87, A0A8I3Q6K4
    Conserved Domains (5) summary
    smart00582
    Location:541 → 676
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 352
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:429 → 480
    Surp; Surp module
    cd12223
    Location:273 → 356
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:836 → 884
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  2. XM_005634544.4 → XP_005634601.1  U2 snRNP-associated SURP motif-containing protein isoform X2

    UniProtKB/TrEMBL
    A0A8C0KE87
    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:156 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  3. XM_022408713.2 → XP_022264421.1  U2 snRNP-associated SURP motif-containing protein isoform X3

    UniProtKB/TrEMBL
    A0A8C0KE87
    Conserved Domains (5) summary
    smart00582
    Location:540 → 675
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    COG0724
    Location:155 → 351
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    pfam01805
    Location:428 → 479
    Surp; Surp module
    cd12223
    Location:272 → 355
    RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
    cd21370
    Location:835 → 883
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

  4. XM_022408714.2 → XP_022264422.1  U2 snRNP-associated SURP motif-containing protein isoform X4

    Conserved Domains (3) summary
    smart00582
    Location:132 → 267
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    pfam01805
    Location:20 → 71
    Surp; Surp module
    cd21370
    Location:427 → 475
    cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins
Nucleotide Protein
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