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SNX9 sorting nexin 9 [ Canis lupus familiaris (dog) ]

Gene ID: 476254, updated on 1-Mar-2025
Official Symbol
SNX9provided by VGNC
Official Full Name
sorting nexin 9provided by VGNC
Primary source
VGNC:VGNC:46645
See related
Ensembl:ENSCAFG00845000878 RGD:12175006
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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See SNX9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (47532216..47644795)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (48191531..48302806)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (47840744..47952026)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (47412288..47523565)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (47282028..47393272)

Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene protein SET-like Neighboring gene voltage-dependent anion-selective channel protein 3-like Neighboring gene uncharacterized LOC111095864 Neighboring gene uncharacterized LOC111090679 Neighboring gene synaptojanin 2 Neighboring gene uncharacterized LOC119870761

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cleavage furrow formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane tubulation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
sorting nexin-9

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051805.1 Reference ROS_Cfam_1.0

    Range
    47532216..47644795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038654519.1 → XP_038510447.1  sorting nexin-9 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T840, A0A8I3MFU3, A0A8P0P3Q0
    Related
    ENSCAFP00845001209.1, ENSCAFT00845001537.1
    Conserved Domains (3) summary
    cd07285
    Location:260 → 385
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:396 → 605
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:15 → 71
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

  2. XM_038654518.1 → XP_038510446.1  sorting nexin-9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5W7
    Related
    ENSCAFP00845001171.1, ENSCAFT00845001493.1
    Conserved Domains (4) summary
    cd07285
    Location:275 → 400
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:411 → 620
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:2 → 57
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
    COG5391
    Location:128 → 382
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049261.1 Alternate UMICH_Zoey_3.1

    Range
    47412288..47523565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038465761.1 → XP_038321689.1  sorting nexin-9 isoform X2

    Conserved Domains (3) summary
    cd07285
    Location:260 → 385
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:396 → 605
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:15 → 71
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

  2. XM_038465760.1 → XP_038321688.1  sorting nexin-9 isoform X1

    Conserved Domains (4) summary
    cd07285
    Location:275 → 400
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:411 → 620
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:2 → 57
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
    COG5391
    Location:128 → 382
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

    Range
    47282028..47393272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038590726.1 → XP_038446654.1  sorting nexin-9 isoform X2

    Conserved Domains (3) summary
    cd07285
    Location:260 → 385
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:396 → 605
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:15 → 71
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

  2. XM_038590725.1 → XP_038446653.1  sorting nexin-9 isoform X1

    Conserved Domains (4) summary
    cd07285
    Location:275 → 400
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:411 → 620
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:2 → 57
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
    COG5391
    Location:128 → 382
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

    Range
    47840744..47952026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038526430.1 → XP_038382358.1  sorting nexin-9 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T840, A0A8I3MFU3, A0A8P0P3Q0
    Conserved Domains (3) summary
    cd07285
    Location:260 → 385
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:396 → 605
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:15 → 71
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

  2. XM_038526429.1 → XP_038382357.1  sorting nexin-9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5W7
    Conserved Domains (4) summary
    cd07285
    Location:275 → 400
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:411 → 620
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:2 → 57
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
    COG5391
    Location:128 → 382
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    48191531..48302806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005615541.2 → XP_005615598.1  sorting nexin-9 isoform X2

    UniProtKB/TrEMBL
    A0A8C0T840, A0A8I3MFU3, A0A8P0P3Q0
    Conserved Domains (3) summary
    cd07285
    Location:260 → 385
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:396 → 605
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:15 → 71
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

  2. XM_005615539.3 → XP_005615596.1  sorting nexin-9 isoform X1

    UniProtKB/TrEMBL
    A0A8C0T5W7
    Conserved Domains (4) summary
    cd07285
    Location:275 → 400
    PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
    cd07668
    Location:411 → 620
    BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
    cd11898
    Location:2 → 57
    SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
    COG5391
    Location:128 → 382
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Nucleotide Protein
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