NEUROG1 neurogenin 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: NEUROG1provided by HGNC
Official Full Name: neurogenin 1provided by HGNC
Primary source: HGNC:HGNC:7764
See related: Ensembl:ENSG00000181965 MIM:601726
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: AKA; ngn1; Math4C; bHLHa6; NEUROD3
Orthologs: mouse all

Genomic context

Location:: 5q31.1

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
109.20200815	current	GRCh38.p13 (GCF_000001405.39)	5	NC_000005.10 (135534282..135535964, complement)
105	previous assembly	GRCh37.p13 (GCF_000001405.25)	5	NC_000005.9 (134869972..134871639, complement)

Chromosome 5 - NC_000005.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NeuroD1 seemed not sufficient to induce and maintain neuronal differentiation. Induction of neuronal differentiation by overexpression of Neurog1 initiated important steps for the development of glutamatergic neurons such as the spiral ganglion neurons
Title: Induction of neuronal-like phenotype in human mesenchymal stem cells by overexpression of Neurogenin1 and treatment with neurotrophins.
mutation not found in group of children with sensorineural hearing loss
Title: The role of transcription factors of neurosensory cells in non-syndromic sensorineural hearing loss with or without inner ear malformation.
Results show that neurogenin-1 and -2 drive homogeneous differentiation of human stem cells into bipolar neurons in 4 days in defined media.
Title: Rapid neurogenesis through transcriptional activation in human stem cells.
We propose NEUROG1 as a new gene for syndromic autosomal recessive hearing loss and congenital cranial dysinnervation disorder
Title: A boy with homozygous microdeletion of NEUROG1 presents with a congenital cranial dysinnervation disorder [Moebius syndrome variant].
Methylation of NEUROG1 is associated with recurrence following adjuvant FOLFOX in Stages II/III colorectal cancer.
Title: Methylation and microsatellite status and recurrence following adjuvant FOLFOX in colorectal cancer.
NEUROG1 gene is frequently found in patients, diagnosed with colorectal cancer.
Title: Methylation of NEUROG1 in serum is a sensitive marker for the detection of early colorectal cancer.
Stable expression of a single gene Ngn1 in F3 cells induces not simply neurogenic but multifunctional changes that potentially affect the differentiation of human NSC via a reorganization of complex gene regulatory networks.
Title: Stable expression of neurogenin 1 induces LGR5, a novel stem cell marker, in an immortalized human neural stem cell line HB1.F3.
The basic helix-loop-helix region of human neurogenin 1 is a monomeric natively unfolded protein which forms a "fuzzy" complex upon DNA binding.
Title: The basic helix-loop-helix region of human neurogenin 1 is a monomeric natively unfolded protein which forms a "fuzzy" complex upon DNA binding.
Major alleles on two NEUROG1-associated SNPs (rs2344484-C-allele and rs8192558-G-allele) were significantly more prevalent among patients. this is the first study to examine brain morphological and neurocognitive correlates of NEUROG1.
Title: Basic helix-loop-helix transcription factor NEUROG1 and schizophrenia: effects on illness susceptibility, MRI brain morphometry and cognitive abilities.
Observational study of gene-disease association. (HuGE Navigator)
Title: Identification of new putative susceptibility genes for several psychiatric disorders by association analysis of regulatory and non-synonymous SNPs of 306 genes involved in neurotransmission and neurodevelopment.

Submit: New GeneRIF Correction See all GeneRIFs (12)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

RH65308 (e-PCR)
- UniSTS:15922

RH80843 (e-PCR)
- UniSTS:90767

Homology

Homologs of the NEUROG1 gene: The NEUROG1 gene is conserved in chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, and frog.
Orthologs from Annotation Pipeline: 263 organisms have orthologs with human gene NEUROG1
Orthologs

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
DNA-binding transcription factor activity	TAS Traceable Author Statement more info	PubMed
DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info	PubMed
DNA-binding transcription factor activity, RNA polymerase II-specific	ISA Inferred from Sequence Alignment more info
DNA-binding transcription factor activity, RNA polymerase II-specific	ISM Inferred from Sequence Model more info	PubMed
E-box binding	IDA Inferred from Direct Assay more info	PubMed
E-box binding	ISS Inferred from Sequence or Structural Similarity more info
RNA polymerase II proximal promoter sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
chromatin binding	ISS Inferred from Sequence or Structural Similarity more info
protein binding	IPI Inferred from Physical Interaction more info	PubMed
protein homodimerization activity	IDA Inferred from Direct Assay more info	PubMed
sequence-specific double-stranded DNA binding	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
auditory behavior	IGI Inferred from Genetic Interaction more info	PubMed
cell fate commitment	IEA Inferred from Electronic Annotation more info
cochlea development	IGI Inferred from Genetic Interaction more info	PubMed
cochlea morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
craniofacial suture morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
genitalia development	IGI Inferred from Genetic Interaction more info	PubMed
genitalia morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
hard palate morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
inner ear development	IGI Inferred from Genetic Interaction more info	PubMed
inner ear morphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
learned vocalization behavior	IGI Inferred from Genetic Interaction more info	PubMed
mastication	IGI Inferred from Genetic Interaction more info	PubMed
negative regulation of relaxation of muscle	IGI Inferred from Genetic Interaction more info	PubMed
negative regulation of saliva secretion	IGI Inferred from Genetic Interaction more info	PubMed
nervous system development	TAS Traceable Author Statement more info	PubMed
neuromuscular process controlling balance	IGI Inferred from Genetic Interaction more info	PubMed
neuron differentiation	IBA Inferred from Biological aspect of Ancestor more info	PubMed
neuron differentiation	IEA Inferred from Electronic Annotation more info
peristalsis	IGI Inferred from Genetic Interaction more info	PubMed
positive regulation of DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of exit from mitosis	IEA Inferred from Electronic Annotation more info
positive regulation of neuron differentiation	ISS Inferred from Sequence or Structural Similarity more info
positive regulation of transcription by RNA polymerase II	ISS Inferred from Sequence or Structural Similarity more info
regulation of muscle organ development	IGI Inferred from Genetic Interaction more info	PubMed
regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info	PubMed
regulation of transcription by RNA polymerase II	TAS Traceable Author Statement more info	PubMed
thorax and anterior abdomen determination	IGI Inferred from Genetic Interaction more info	PubMed
trigeminal nerve development	IGI Inferred from Genetic Interaction more info	PubMed
vestibulocochlear nerve formation	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
nuclear chromatin	ISA Inferred from Sequence Alignment more info
nucleus	IBA Inferred from Biological aspect of Ancestor more info	PubMed
perikaryon	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: neurogenin-1

Names: NGN-1; class A basic helix-loop-helix protein 6; neurogenic basic-helix-loop-helix protein; neurogenic differentiation 3; neurogenic differentiation factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_006161.3 → NP_006152.2 neurogenin-1

See identical proteins and their annotated locations for NP_006152.2

Status: VALIDATED

Source sequence(s)

AC005738, BC028226

Consensus CDS

CCDS4187.1

UniProtKB/Swiss-Prot

Q92886

UniProtKB/TrEMBL

F1T0H3

Related

ENSP00000317580.4, ENST00000314744.6

Conserved Domains (1) summary

cd00083
Location:90 → 149

HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...