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NEUROG1 neurogenin 1 [ Homo sapiens (human) ]

Gene ID: 4762, updated on 18-Aug-2020

Summary

Official Symbol
NEUROG1provided by HGNC
Official Full Name
neurogenin 1provided by HGNC
Primary source
HGNC:HGNC:7764
See related
Ensembl:ENSG00000181965 MIM:601726
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AKA; ngn1; Math4C; bHLHa6; NEUROD3
Orthologs

Genomic context

See NEUROG1 in Genome Data Viewer
Location:
5q31.1
Exon count:
1
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (135534282..135535964, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (134869972..134871639, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene chromosome 5 putative open reading frame 66 Neighboring gene macroH2A.1 histone Neighboring gene dendritic cell associated nuclear protein Neighboring gene TIFA inhibitor Neighboring gene solute carrier family 25 member 48 Neighboring gene C-X-C motif chemokine ligand 14 Neighboring gene SLC25A48 antisense RNA 1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity TAS
Traceable Author Statement
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Inferred from Sequence Alignment
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific ISM
Inferred from Sequence Model
more info
PubMed 
E-box binding IDA
Inferred from Direct Assay
more info
PubMed 
E-box binding ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA polymerase II proximal promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin binding ISS
Inferred from Sequence or Structural Similarity
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein homodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
sequence-specific double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
auditory behavior IGI
Inferred from Genetic Interaction
more info
PubMed 
cell fate commitment IEA
Inferred from Electronic Annotation
more info
 
cochlea development IGI
Inferred from Genetic Interaction
more info
PubMed 
cochlea morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
craniofacial suture morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
genitalia development IGI
Inferred from Genetic Interaction
more info
PubMed 
genitalia morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
hard palate morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
inner ear development IGI
Inferred from Genetic Interaction
more info
PubMed 
inner ear morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
learned vocalization behavior IGI
Inferred from Genetic Interaction
more info
PubMed 
mastication IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of relaxation of muscle IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of saliva secretion IGI
Inferred from Genetic Interaction
more info
PubMed 
nervous system development TAS
Traceable Author Statement
more info
PubMed 
neuromuscular process controlling balance IGI
Inferred from Genetic Interaction
more info
PubMed 
neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
peristalsis IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of exit from mitosis IEA
Inferred from Electronic Annotation
more info
 
positive regulation of neuron differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of muscle organ development IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II TAS
Traceable Author Statement
more info
PubMed 
thorax and anterior abdomen determination IGI
Inferred from Genetic Interaction
more info
PubMed 
trigeminal nerve development IGI
Inferred from Genetic Interaction
more info
PubMed 
vestibulocochlear nerve formation IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
nuclear chromatin ISA
Inferred from Sequence Alignment
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
perikaryon IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
neurogenin-1
Names
NGN-1
class A basic helix-loop-helix protein 6
neurogenic basic-helix-loop-helix protein
neurogenic differentiation 3
neurogenic differentiation factor 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006161.3NP_006152.2  neurogenin-1

    See identical proteins and their annotated locations for NP_006152.2

    Status: VALIDATED

    Source sequence(s)
    AC005738, BC028226
    Consensus CDS
    CCDS4187.1
    UniProtKB/Swiss-Prot
    Q92886
    UniProtKB/TrEMBL
    F1T0H3
    Related
    ENSP00000317580.4, ENST00000314744.6
    Conserved Domains (1) summary
    cd00083
    Location:90149
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    135534282..135535964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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