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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference ROS_Cfam_1.0
Genomic
-
NC_051821.1 Reference ROS_Cfam_1.0
- Range
-
52993051..53106214 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038691832.1 → XP_038547760.1 E3 ubiquitin-protein ligase TRIM33 isoform X2
- UniProtKB/TrEMBL
-
A0A8I3PQR3
- Related
- ENSCAFP00845033407.1, ENSCAFT00845042608.1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1066
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PRK10263
Location:476 → 643
- PRK10263; DNA translocase FtsK; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
-
XM_038691831.1 → XP_038547759.1 E3 ubiquitin-protein ligase TRIM33 isoform X1
- UniProtKB/TrEMBL
-
A0A8I3PQG1
- Related
- ENSCAFP00845033298.1, ENSCAFT00845042479.1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1083
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PHA03379
Location:539 → 743
- PHA03379; EBNA-3A; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
Alternate UMICH_Zoey_3.1
Genomic
-
NC_049277.1 Alternate UMICH_Zoey_3.1
- Range
-
52002778..52115804 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038499263.1 → XP_038355191.1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1066
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PRK10263
Location:476 → 643
- PRK10263; DNA translocase FtsK; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
-
XM_038499262.1 → XP_038355190.1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1083
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PHA03379
Location:539 → 743
- PHA03379; EBNA-3A; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
Alternate UNSW_CanFamBas_1.0
Genomic
-
NC_049758.1 Alternate UNSW_CanFamBas_1.0
- Range
-
52070390..52183451 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038625898.1 → XP_038481826.1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1066
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PRK10263
Location:476 → 643
- PRK10263; DNA translocase FtsK; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
-
XM_038625897.1 → XP_038481825.1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1083
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PHA03379
Location:539 → 743
- PHA03379; EBNA-3A; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
Alternate UU_Cfam_GSD_1.0
Genomic
-
NC_049238.1 Alternate UU_Cfam_GSD_1.0
- Range
-
52643538..52756887 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038561828.1 → XP_038417756.1 E3 ubiquitin-protein ligase TRIM33 isoform X2
- UniProtKB/TrEMBL
-
A0A8I3PQR3
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1066
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PRK10263
Location:476 → 643
- PRK10263; DNA translocase FtsK; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
-
XM_038561827.1 → XP_038417755.1 E3 ubiquitin-protein ligase TRIM33 isoform X1
- UniProtKB/TrEMBL
-
A0A8I3PQG1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1083
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PHA03379
Location:539 → 743
- PHA03379; EBNA-3A; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
Alternate Dog10K_Boxer_Tasha Primary Assembly
Genomic
-
NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly
- Range
-
51767972..51880982 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_038453068.1 → XP_038308996.1 E3 ubiquitin-protein ligase TRIM33 isoform X2
- UniProtKB/TrEMBL
-
A0A8I3PQR3
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1066
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PRK10263
Location:476 → 643
- PRK10263; DNA translocase FtsK; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)
-
XM_038453067.1 → XP_038308995.1 E3 ubiquitin-protein ligase TRIM33 isoform X1
- UniProtKB/TrEMBL
-
A0A8I3PQG1
- Conserved Domains (7) summary
-
- cd05502
Location:958 → 1083
- Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
- smart00502
Location:319 → 445
- BBC; B-Box C-terminal domain
- PHA03379
Location:539 → 743
- PHA03379; EBNA-3A; Provisional
- cd15624
Location:889 → 934
- PHD_TIF1gamma; PHD finger found in transcriptional intermediary factor 1 gamma (TIF1gamma)
- cd16766
Location:121 → 188
- RING-HC_TIF1gamma; RING finger, HC subclass, found in transcriptional inknown asiary factor 1 gamma (TIF1gamma)
- cd19830
Location:268 → 320
- Bbox2_TIF1g_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 gamma (TIF1-gamma)
- cd19847
Location:210 → 263
- Bbox1_TIF1g_C-VI; B-box-type 1 zinc finger found in transcriptional intermediary factor 1 gamma (TIF1-gamma)