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APOB apolipoprotein B [ Canis lupus familiaris (dog) ]

Gene ID: 475680, updated on 7-Oct-2019

Summary

Official Symbol
APOBprovided by VGNC
Official Full Name
apolipoprotein Bprovided by VGNC
Primary source
VGNC:VGNC:37994
See related
Ensembl:ENSCAFG00000003887
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs

Genomic context

See APOB in Genome Data Viewer
Location:
chromosome: 17
Exon count:
29
Annotation release Status Assembly Chr Location
105 current CanFam3.1 (GCF_000002285.3) 17 NC_006599.3 (15877937..15916032, complement)

Chromosome 17 - NC_006599.3Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein Nup88 pseudogene Neighboring gene lipid droplet associated hydrolase Neighboring gene uncharacterized LOC111090394 Neighboring gene tudor domain containing 15 Neighboring gene uncharacterized LOC111090521

Genomic regions, transcripts, and products

Genomic Sequence:
NC_006599.3 Chromosome 17 Reference CanFam3.1 Primary Assembly

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
apolipoprotein B-100
Names
apolipoprotein B (including Ag(x) antigen)

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CanFam3.1 Primary Assembly

Genomic

  1. NC_006599.3 Reference CanFam3.1 Primary Assembly

    Range
    15877937..15916032 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005630596.1XP_005630653.1  apolipoprotein B-100

    Related
    ENSCAFP00000005806.3, ENSCAFT00000006266.3
    Conserved Domains (6) summary
    pfam01347
    Location:182733
    Vitellogenin_N; Lipoprotein amino terminal region
    pfam01442
    Location:24952659
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    pfam06160
    Location:22182587
    EzrA; Septation ring formation regulator, EzrA
    pfam06448
    Location:10971198
    DUF1081; Domain of Unknown Function (DUF1081)
    pfam09172
    Location:7681080
    DUF1943; Domain of unknown function (DUF1943)
    pfam12491
    Location:45164572
    ApoB100_C; Apolipoprotein B100 C terminal
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