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CLOCK clock circadian regulator [ Canis lupus familiaris (dog) ]

Gene ID: 475145, updated on 25-Jul-2026
Official Symbol
CLOCKprovided by VGNC
Official Full Name
clock circadian regulatorprovided by VGNC
Primary source
VGNC:VGNC:39353
See related
Ensembl:ENSCAFG00845012371 RGD:12188863
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
CLK
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See CLOCK in Genome Data Viewer
Location:
chromosome: 13
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (48295259..48436678, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (47641539..47782815, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (48447647..48588918, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (47970216..48111463, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (47498942..47640139, complement)

Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111098620 Neighboring gene transmembrane protein 165 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC111098621 Neighboring gene phosducin like 2 Neighboring gene neuromedin U

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Genome-wide identification and analysis of basic helix-loop-helix domains in dog, Canis lupus familiaris. Wang XH, et al. Mol Genet Genomics, 2015 Apr. PMID 25403511
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables E-box binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CLOCK-BMAL transcription complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
circadian locomoter output cycles protein kaput
Names
clock homolog
XP_005628255.1
XP_005628256.1
XP_005628257.1
XP_005628259.1
XP_013974283.1
XP_013974286.1
XP_013974288.1
XP_038282253.1
XP_038282260.1
XP_038282261.1
XP_038282262.1
XP_038282270.1
XP_038349736.1
XP_038349737.1
XP_038349738.1
XP_038349739.1
XP_038349740.1
XP_038349741.1
XP_038349742.1
XP_038349743.1
XP_038349745.1
XP_038349746.1
XP_038349747.1
XP_038349748.1
XP_038412058.1
XP_038412059.1
XP_038412060.1
XP_038412061.1
XP_038412062.1
XP_038412063.1
XP_038412064.1
XP_038412065.1
XP_038412066.1
XP_038412067.1
XP_038412068.1
XP_038412069.1
XP_038475991.1
XP_038475992.1
XP_038475993.1
XP_038475994.1
XP_038475995.1
XP_038475996.1
XP_038475997.1
XP_038475998.1
XP_038475999.1
XP_038476000.1
XP_038476001.1
XP_038476002.1
XP_038541597.1
XP_038541598.1
XP_038541599.1
XP_038541600.1
XP_038541601.1
XP_038541602.1
XP_038541603.1
XP_038541604.1
XP_038541605.1
XP_038541606.1
XP_038541607.1
XP_038541608.1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051817.1 Reference ROS_Cfam_1.0

    Range
    48295259..48436678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038685679.1 → XP_038541607.1  circadian locomoter output cycles protein kaput isoform X3

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:524 → 759
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_038685678.1 → XP_038541606.1  circadian locomoter output cycles protein kaput isoform X2

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 788
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038685669.1 → XP_038541597.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  4. XM_038685673.1 → XP_038541601.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  5. XM_038685674.1 → XP_038541602.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  6. XM_038685670.1 → XP_038541598.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Related
    ENSCAFP00845017296.1, ENSCAFT00845022001.1
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  7. XM_038685675.1 → XP_038541603.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  8. XM_038685671.1 → XP_038541599.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  9. XM_038685676.1 → XP_038541604.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Related
    ENSCAFP00845017336.1, ENSCAFT00845022051.1
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  10. XM_038685672.1 → XP_038541600.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  11. XM_038685677.1 → XP_038541605.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  12. XM_038685680.1 → XP_038541608.1  circadian locomoter output cycles protein kaput isoform X4

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (3) summary
    cd00130
    Location:3 → 91
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:149 → 252
    PAS_11; PAS domain
    cl41773
    Location:429 → 664
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049273.1 Alternate UMICH_Zoey_3.1

    Range
    47970216..48111463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038493819.1 → XP_038349747.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:524 → 759
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_038493818.1 → XP_038349746.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 788
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038493808.1 → XP_038349736.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  4. XM_038493812.1 → XP_038349740.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  5. XM_038493813.1 → XP_038349741.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  6. XM_038493809.1 → XP_038349737.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  7. XM_038493814.1 → XP_038349742.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  8. XM_038493810.1 → XP_038349738.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  9. XM_038493815.1 → XP_038349743.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  10. XM_038493811.1 → XP_038349739.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  11. XM_038493817.1 → XP_038349745.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  12. XM_038493820.1 → XP_038349748.1  

    Conserved Domains (3) summary
    cd00130
    Location:3 → 91
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:149 → 252
    PAS_11; PAS domain
    cl41773
    Location:429 → 664
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

    Range
    47498942..47640139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038620073.1 → XP_038476001.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:524 → 759
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_038620072.1 → XP_038476000.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 788
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038620063.1 → XP_038475991.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  4. XM_038620067.1 → XP_038475995.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  5. XM_038620068.1 → XP_038475996.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  6. XM_038620064.1 → XP_038475992.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  7. XM_038620069.1 → XP_038475997.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  8. XM_038620065.1 → XP_038475993.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  9. XM_038620070.1 → XP_038475998.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  10. XM_038620066.1 → XP_038475994.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  11. XM_038620071.1 → XP_038475999.1  

    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  12. XM_038620074.1 → XP_038476002.1  

    Conserved Domains (3) summary
    cd00130
    Location:3 → 91
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:149 → 252
    PAS_11; PAS domain
    cl41773
    Location:429 → 664
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

    Range
    48447647..48588918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038556140.1 → XP_038412068.1  circadian locomoter output cycles protein kaput isoform X3

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:524 → 759
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_038556139.1 → XP_038412067.1  circadian locomoter output cycles protein kaput isoform X2

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 788
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_038556130.1 → XP_038412058.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  4. XM_038556134.1 → XP_038412062.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  5. XM_038556135.1 → XP_038412063.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  6. XM_038556131.1 → XP_038412059.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  7. XM_038556136.1 → XP_038412064.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  8. XM_038556132.1 → XP_038412060.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  9. XM_038556137.1 → XP_038412065.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  10. XM_038556133.1 → XP_038412061.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  11. XM_038556138.1 → XP_038412066.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  12. XM_038556141.1 → XP_038412069.1  circadian locomoter output cycles protein kaput isoform X4

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (3) summary
    cd00130
    Location:3 → 91
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:149 → 252
    PAS_11; PAS domain
    cl41773
    Location:429 → 664
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    47641539..47782815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014118811.3 → XP_013974286.1  circadian locomoter output cycles protein kaput isoform X3

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:524 → 759
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_005628202.4 → XP_005628259.1  circadian locomoter output cycles protein kaput isoform X2

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 788
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_005628198.4 → XP_005628255.1  circadian locomoter output cycles protein kaput isoform X1

    See identical proteins and their annotated locations for XP_005628255.1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  4. XM_005628199.4 → XP_005628256.1  circadian locomoter output cycles protein kaput isoform X1

    See identical proteins and their annotated locations for XP_005628256.1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  5. XM_014118808.3 → XP_013974283.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  6. XM_038426325.1 → XP_038282253.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  7. XM_038426333.1 → XP_038282261.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  8. XM_038426332.1 → XP_038282260.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  9. XM_038426334.1 → XP_038282262.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  10. XM_005628200.4 → XP_005628257.1  circadian locomoter output cycles protein kaput isoform X1

    See identical proteins and their annotated locations for XP_005628257.1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  11. XM_038426342.1 → XP_038282270.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8C0LSZ3, A0A8I3NBB7, A0A8I3RZC6
    Conserved Domains (4) summary
    cd19734
    Location:29 → 89
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109 → 175
    PAS; PAS fold
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
    cl41773
    Location:554 → 789
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  12. XM_014118813.3 → XP_013974288.1  circadian locomoter output cycles protein kaput isoform X4

    UniProtKB/TrEMBL
    A0A8I3RZC6
    Conserved Domains (3) summary
    cd00130
    Location:3 → 91
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:149 → 252
    PAS_11; PAS domain
    cl41773
    Location:429 → 664
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
Nucleotide Protein
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