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PBDC1 polysaccharide biosynthesis domain containing 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 473674, updated on 6-Oct-2018

Summary

Official Symbol
PBDC1provided by VGNC
Official Full Name
polysaccharide biosynthesis domain containing 1provided by VGNC
Primary source
VGNC:VGNC:14710
Locus tag
CK820_G0050681
See related
Ensembl:ENSPTRG00000022046
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
CXorf26
Orthologs

Genomic context

See PBDC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
105 current Clint_PTRv2 (GCF_002880755.1) X NC_036902.1 (71637225..71642644)
103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) X NC_006491.3 (76008163..76012322)

Chromosome X - NC_036902.1Genomic Context describing neighboring genes Neighboring gene GTP-binding protein SAR1a pseudogene Neighboring gene ADP-ribosylation factor-like protein 5A pseudogene Neighboring gene methylmalonic aciduria and homocystinuria type D protein, mitochondrial pseudogene Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
  • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
  • BioProject: PRJNA271912
  • Publication: PMID 25392405
  • Analysis date: Tue Apr 3 07:13:10 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Clint_PTRv2 Primary Assembly

Genomic

  1. NC_036902.1 Reference Clint_PTRv2 Primary Assembly

    Range
    71637225..71642644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016944123.2XP_016799612.2  protein PBDC1 isoform X2

    Conserved Domains (1) summary
    cl04661
    Location:35100
    Polysacc_synt_4; Polysaccharide biosynthesis
  2. XM_016944122.2XP_016799611.2  protein PBDC1 isoform X1

    Conserved Domains (1) summary
    pfam04669
    Location:35159
    Polysacc_synt_4; Polysaccharide biosynthesis
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