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FNTA farnesyltransferase, CAAX box, alpha [ Pan troglodytes (chimpanzee) ]

Gene ID: 472929, updated on 29-Mar-2024

Summary

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Gene symbol
FNTA
Gene description
farnesyltransferase, CAAX box, alpha
Locus tag
CK820_G0013011
See related
Ensembl:ENSPTRG00000020213
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See FNTA in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 7 NC_072405.2 (51361336..51391609)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 8 NC_072406.1 (54948655..54978403)

Chromosome 7 - NC_072405.2Genomic Context describing neighboring genes Neighboring gene ring finger protein 170 Neighboring gene hook microtubule tethering protein 3 Neighboring gene U1 spliceosomal RNA Neighboring gene protein O-mannose kinase Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase Neighboring gene uncharacterized LOC134810675

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CAAX-protein geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein farnesyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein farnesylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CAAX-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein farnesyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
Names
farnesyltransferase, CAAX box, subunit alpha
protein farnesyltransferase/ geranylgeranyltransferase type I alpha subunit
NP_001267120.1
XP_016814444.1
XP_016814446.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280191.1 → NP_001267120.1  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

    See identical proteins and their annotated locations for NP_001267120.1

    Status: PROVISIONAL

    Source sequence(s)
    AK305635
    UniProtKB/TrEMBL
    G2HFX1
    Related
    ENSPTRP00000034622.4, ENSPTRT00000037461.5
    Conserved Domains (2) summary
    PLN02789
    Location:71 → 372
    PLN02789; farnesyltranstransferase
    pfam01239
    Location:192 → 218
    PPTA; Protein prenyltransferase alpha subunit repeat

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072405.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    51361336..51391609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016958955.3 → XP_016814444.1  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform X1

    Conserved Domains (2) summary
    PLN02789
    Location:55 → 357
    PLN02789; farnesyltranstransferase
    pfam01239
    Location:177 → 203
    PPTA; Protein prenyltransferase alpha subunit repeat

  2. XM_016958957.3 → XP_016814446.1  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha isoform X2

    Conserved Domains (1) summary
    PLN02789
    Location:75 → 305
    PLN02789; farnesyltranstransferase

RNA

  1. XR_010159126.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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