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NR2E1 nuclear receptor subfamily 2 group E member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 472088, updated on 29-Mar-2024

Summary

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Official Symbol
NR2E1provided by VGNC
Official Full Name
nuclear receptor subfamily 2 group E member 1provided by VGNC
Primary source
VGNC:VGNC:3597
Locus tag
CK820_G0000589
See related
Ensembl:ENSPTRG00000018472 Ensembl:ENSPTRG00000043845
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (120077244..120099994)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (120075727..120098477)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL3-like Neighboring gene osteoclastogenesis associated transmembrane protein 1 Neighboring gene small nucleolar RNA U13 Neighboring gene sorting nexin 3 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor subfamily 2 group E member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    120077244..120099994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_527467.7 → XP_527467.2  nuclear receptor subfamily 2 group E member 1 isoform X1

    See identical proteins and their annotated locations for XP_527467.2

    UniProtKB/TrEMBL
    A0A2J8PUL4, A0A6D2YAH3, H2QTI2
    Related
    ENSPTRP00000031550.3
    Conserved Domains (2) summary
    cd06950
    Location:154 → 369
    NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
    cd07163
    Location:8 → 99
    NR_DBD_TLX; DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers

  2. XM_009451786.4 → XP_009450061.1  nuclear receptor subfamily 2 group E member 1 isoform X2

    See identical proteins and their annotated locations for XP_009450061.1

    UniProtKB/TrEMBL
    A0A2I3S7T8, A0A2J8PUM5, A0A6D2XD46
    Related
    ENSPTRP00000073105.1
    Conserved Domains (2) summary
    cd06950
    Location:191 → 406
    NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
    cd07163
    Location:45 → 136
    NR_DBD_TLX; DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers
Nucleotide Protein
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