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ACLA_079710 mRNA splicing factor RNA helicase (Cdc28), putative [ Aspergillus clavatus NRRL 1 ]

Gene ID: 4700030, updated on 28-Dec-2023

Summary

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Gene symbol
ACLA_079710
Gene description
mRNA splicing factor RNA helicase (Cdc28), putative
Locus tag
ACLA_079710
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus clavatus NRRL 1 (strain: NRRL 1, type-material: culture from type material of Aspergillus clavatus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Fumigati
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Genomic context

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Location:
chromosome: Unknown
Exon count:
1

NW_001517093.1Genomic Context describing neighboring genes Neighboring gene nonribosomal siderophore peptide synthase, putative Neighboring gene protein kinase, putative Neighboring gene cytochrome b5, putative Neighboring gene nuclear migration protein, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001517093.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. Fedorova ND, et al. PLoS Genet, 2008 Apr 11. PMID 18404212, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Repeated regions

  • Loc: 129680-129704 rpt_type = tandem , rpt_unit_seq = ggatgc , satellite = microsatellite

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA splicing factor RNA helicase (Cdc28), putative
XP_001267713.1
  • encoded by transcript ACLA_079710A
    predicted by EVM2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001517093.1 Reference assembly

    Range
    129378..132767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001267712.1 → XP_001267713.1  mRNA splicing factor RNA helicase (Cdc28), putative [Aspergillus clavatus NRRL 1]

    See identical proteins and their annotated locations for XP_001267713.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A1CSK0
    Conserved Domains (6) summary
    smart00487
    Location:479 → 665
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:880 → 965
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:498 → 637
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:662 → 819
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam07717
    Location:1000 → 1101
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cl02562
    Location:4 → 63
    PWI; PWI domain
Nucleotide Protein
Heading Accession and Version

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