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WDTC1 WD and tetratricopeptide repeats 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 469244, updated on 3-Dec-2024

Summary

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Official Symbol
WDTC1provided by VGNC
Official Full Name
WD and tetratricopeptide repeats 1provided by VGNC
Primary source
VGNC:VGNC:1635
Locus tag
CK820_G0045780
See related
Ensembl:ENSPTRG00000000401
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See WDTC1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (203683437..203756937, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (27542356..27615857)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 1 Neighboring gene actin, alpha skeletal muscle-like Neighboring gene transmembrane protein 222 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112209475 Neighboring gene nucleophosmin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD and tetratricopeptide repeats protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    203683437..203756937 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024357242.3 → XP_024213010.1  WD and tetratricopeptide repeats protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8JNW1, A0A2J8JNY1
    Conserved Domains (4) summary
    PLN03088
    Location:367 → 437
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:365 → 389
    TPR; TPR repeat [structural motif]
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:34 → 163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_016957114.3 → XP_016812603.1  WD and tetratricopeptide repeats protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8JNY1, A0A2J8JNY2, A0A8I3B2I0, K7B831, K7CMQ2
    Related
    ENSPTRP00000000703.4
    Conserved Domains (4) summary
    PLN03088
    Location:368 → 438
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:366 → 390
    TPR; TPR repeat [structural motif]
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:34 → 163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_063783961.1 → XP_063640031.1  WD and tetratricopeptide repeats protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A2J8JNY1

  4. XM_063783959.1 → XP_063640029.1  WD and tetratricopeptide repeats protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8JNY1
Nucleotide Protein
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