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NR1H3 nuclear receptor subfamily 1 group H member 3 [ Pan troglodytes (chimpanzee) ]

Gene ID: 466507, updated on 17-Aug-2024

Summary

Official Symbol
NR1H3provided by VGNC
Official Full Name
nuclear receptor subfamily 1 group H member 3provided by VGNC
Primary source
VGNC:VGNC:3089
Locus tag
CK820_G0028898
See related
Ensembl:ENSPTRG00000003560
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
NR1H2; LXR-alpha
Orthologs
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Genomic context

See NR1H3 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (51262860..51282837)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (51067015..51087169)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein uS10-like Neighboring gene damage specific DNA binding protein 2 Neighboring gene acid phosphatase 2, lysosomal Neighboring gene MAP kinase activating death domain Neighboring gene myosin binding protein C3

Genomic regions, transcripts, and products

Pathways from PubChem

General protein information

Preferred Names
oxysterols receptor LXR-alpha
XP_001168367.1
XP_009458623.1
XP_009458624.1
XP_009458628.1
XP_009458632.1
XP_016776327.1
XP_054517326.1
XP_063639001.1
XP_521906.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    51262860..51282837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009460357.3XP_009458632.1  oxysterols receptor LXR-alpha isoform X5

    See identical proteins and their annotated locations for XP_009458632.1

    UniProtKB/TrEMBL
    A0A2I3SPS8, A0A2J8LH04, A0A6D2W0D7
    Related
    ENSPTRP00000079039.1
    Conserved Domains (2) summary
    cd06954
    Location:216451
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:84184
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers
  2. XM_009460349.4XP_009458624.1  oxysterols receptor LXR-alpha isoform X1

    See identical proteins and their annotated locations for XP_009458624.1

    UniProtKB/TrEMBL
    A0A2J8LH05, A0A6D2XX46, H2Q3I8, K7AUZ1
    Related
    ENSPTRP00000072725.1
    Conserved Domains (2) summary
    cd06954
    Location:210445
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:78178
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers
  3. XM_001168367.6XP_001168367.1  oxysterols receptor LXR-alpha isoform X2

    See identical proteins and their annotated locations for XP_001168367.1

    UniProtKB/TrEMBL
    A0A2J8LH01
    Conserved Domains (2) summary
    cd06954
    Location:165400
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:33133
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers
  4. XM_009460353.4XP_009458628.1  oxysterols receptor LXR-alpha isoform X2

    See identical proteins and their annotated locations for XP_009458628.1

    UniProtKB/TrEMBL
    A0A2J8LH01
    Conserved Domains (2) summary
    cd06954
    Location:165400
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:33133
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers
  5. XM_054661351.2XP_054517326.1  oxysterols receptor LXR-alpha isoform X4

  6. XM_521906.9XP_521906.1  oxysterols receptor LXR-alpha isoform X1

    See identical proteins and their annotated locations for XP_521906.1

    UniProtKB/TrEMBL
    A0A2J8LH05, A0A6D2XX46, H2Q3I8, K7AUZ1
    Conserved Domains (2) summary
    cd06954
    Location:210445
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:78178
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers
  7. XM_016920838.4XP_016776327.1  oxysterols receptor LXR-alpha isoform X3

  8. XM_063782931.1XP_063639001.1  oxysterols receptor LXR-alpha isoform X4

  9. XM_009460348.4XP_009458623.1  oxysterols receptor LXR-alpha isoform X1

    See identical proteins and their annotated locations for XP_009458623.1

    UniProtKB/TrEMBL
    A0A2J8LH05, A0A6D2XX46, H2Q3I8, K7AUZ1
    Related
    ENSPTRP00000006182.5
    Conserved Domains (2) summary
    cd06954
    Location:210445
    NR_LBD_LXR; The ligand binding domain of Liver X receptors, a family of nuclear receptors of ligand-activated transcription factors
    cd07160
    Location:78178
    NR_DBD_LXR; DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers

RNA

  1. XR_010147199.1 RNA Sequence

  2. XR_010147198.1 RNA Sequence

  3. XR_010147197.1 RNA Sequence