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TUB TUB bipartite transcription factor [ Pan troglodytes (chimpanzee) ]

Gene ID: 466436, updated on 29-Mar-2024

Summary

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Official Symbol
TUBprovided by VGNC
Official Full Name
TUB bipartite transcription factorprovided by VGNC
Primary source
VGNC:VGNC:12767
Locus tag
CK820_G0005837
See related
Ensembl:ENSPTRG00000003327
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (12154365..12267765)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (12039076..12152319)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene NLR family pyrin domain containing 10 Neighboring gene eukaryotic translation initiation factor 3 subunit F Neighboring gene RIC3 acetylcholine receptor chaperone Neighboring gene LIM domain only 1 Neighboring gene serine/threonine kinase 33 Neighboring gene small Cajal body-specific RNA 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubby protein homolog
Names
tubby bipartite transcription factor
tubby homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    12154365..12267765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_521835.8 → XP_521835.6  tubby protein homolog isoform X2

  2. XM_016920296.4 → XP_016775785.1  tubby protein homolog isoform X3

  3. XM_009459894.5 → XP_009458169.1  tubby protein homolog isoform X6

    Conserved Domains (2) summary
    pfam01167
    Location:257 → 498
    Tub; Tub family
    pfam16322
    Location:84 → 236
    Tub_N; Tubby N-terminal

  4. XM_009459891.5 → XP_009458166.1  tubby protein homolog isoform X1

    UniProtKB/TrEMBL
    A0A2J8P642, A0A6D2WS93, H2Q349
    Related
    ENSPTRP00000005811.4
    Conserved Domains (2) summary
    pfam01167
    Location:313 → 554
    Tub; Tub family
    pfam16322
    Location:84 → 292
    Tub_N; Tubby N-terminal

  5. XM_009459893.5 → XP_009458168.1  tubby protein homolog isoform X5

    See identical proteins and their annotated locations for XP_009458168.1

    UniProtKB/TrEMBL
    A0A2J8P664, A0A6D2XJN9, K7CYM8
    Related
    ENSPTRP00000070375.1
    Conserved Domains (2) summary
    pfam01167
    Location:258 → 499
    Tub; Tub family
    pfam16322
    Location:29 → 237
    Tub_N; Tubby N-terminal

  6. XM_009459892.5 → XP_009458167.1  tubby protein homolog isoform X4

    Conserved Domains (2) summary
    pfam01167
    Location:270 → 511
    Tub; Tub family
    pfam16322
    Location:41 → 249
    Tub_N; Tubby N-terminal
Nucleotide Protein
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